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CHEMICAL SYNTHESIS OF A NEW MATERIAL OF ANTISENSE NUCLEIC ACID "2'-PHOSPHORYLATED RNAS" -DIRECTED TOWARD ITS BASIC STRUCTURAL STUDIES AND REGULATION OF EXPRESSION OF HIV VIRUS-

Research Project

Project/Area Number 05558090
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field Molecular biology
Research InstitutionTOKYO INSTITUTE OF TECHNOLOGY

Principal Investigator

SEKINE Mitsuo  TOKYO INSTITUTE OF TECHNOLOGY,FACULTY OF BIOSCIENCE AND BIOTECHNOLOGY,ASSOCIATE PROFESSOR, 生命理工学部, 助教授 (40111679)

Co-Investigator(Kenkyū-buntansha) 高橋 秀臣  日本ミリポア, R&D研, 主任研究員
西川 一八  東京工業大学, 生命理工学部, 助教授 (60109262)
WADA Takeshi  TOKYO INSTITUTE OF TECHNOLOGY,FACULTY OF BIOSCIENCE AND BIOTECHNOLOGY,RESEARCH A (90240548)
Project Period (FY) 1993 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 1994: ¥6,500,000 (Direct Cost: ¥6,500,000)
Fiscal Year 1993: ¥9,000,000 (Direct Cost: ¥9,000,000)
KeywordsANTISENCE NUCLEIC ACID / 2'-PHOSPHATE / RNA / CHEMICAL SYNTHESIS / HIV / SOLID PHASE SYNTHESIS / ENZYME RESISTANCE / AMIDITE
Research Abstract

This year, we have tried to study the development of new organic reactions required for the synthesis of 2'-phosphorylated RNAs. As the result, we have achieved the following results : First, we found that bis (2-cyano-1,1-dimethylethyl) phosphoryl can be used not only as a 2'-hydroxyl protecting groups but also as a precursor of the 2'-phosphate group. This protected phosphoryl group was found to be quite stable upon removal of a 3', 5-cyclic silyl protecting group with HF/Py in dichloromethane and not to migrate from the 3'-2'hydroxyl functions. This finding led us to realize the construction of key intermediates, 2'-phosphorylated 3'-phosphoramide units which were required throughout this study. The building units were utilized for the solid phase synthesis of 2'-phosphorylated uridylate derivatives. We could synthesize 2,4,6, and 10mers of 2'-phosphorylated uridylates in good yields. They were found to be resistant to acid and alkaline conditions as well as enzymatic digestion with spleen phosphodiesterase. In particular, the 10 mer proved to have an unique structure as evidenced by NMR.At the present time, we are studying the binding ability of these new nucleic acid derivatives for target DNA or RNA fragmets.

Report

(3 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] M. sekine et al.: "Simultaneous removal of two 2-cyano-1, 1-dimethyl-ethyl groups from bis (2-cyano-1, 1-dimethylethyl)" Natural Products Letters. 5. 41-46 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M. Sekine et al.: "New method for removal of modified trityl and pixyl groups by use of an acid species generated" Nucleosides & Nucleotides. 6&7. 1397-1414 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T. Wada et al.: "2-Trimethylsilylethyl as a phosphate protecting groups in oligonucleotide synthesis" Tetrahedron Letters. 35. 757-760 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M. Katahira et al: "A Raman spectroscopic study on conformations of DNA oligomers" Nucleosides & Nucleotides. 6&7. 1467-1482 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M. Sekine et al.: "Chemical synthesis and properties of an inter-residually cyclized uridylyl(3'-5')uridine" J. Am. Chem. Soc.116. 4469-4470 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T, Wada et al.: "Synthesis and properties of N-phosphorylated nucleosides" J. Am. Chem. Soc.116. 9901-9911 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Sekine et al.: "Simultaneous removal of two 2-cyano-ethyl groups from bis (2-cyano-1,1-dimethylethyl) thymidine 3'-phosphate derivatives by the use of DBU/BSA" Natural Products Letters. 5. 41-46 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Sekine et al.: "New method for removal of modified trityl and pixyl groups by use of an acid species generated by reaction of diethyl oxamalonate with methanol" Nucleosides & Nucleotides. 6&7. 1397-1414 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Wada et al.: "2-Trimethylsilylethyl as a phosphate protecting group in oligonucleotide synthesis" Tetrahedron Letters. 35. 757-760 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Katahira et.al: "A Raman spectroscopic study on conformations of DNA oligomers" Nucleosides & Nucleotides. 6&7. 1467-1487 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Sekine et.al: "Chemical synthesis and properties of an interresidueally cyclized uridylyl (3'-5') uridine as a model of tRNA structure having a sharp bend" J.Am.Chem.Soc.116. 4469-4470 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Wada et al: "Synthesis and Properties of N-phosphorylated nucleosides" J.Am.Chem.Soc.116. 9901-9911 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Sekine et al.: "Simultaneous Removal of Two 2-Cyano-1,1-dimethylethyl Groups from Bis(2-Cyano-1,1-dimethylethyl)thymidine 3'-Phosphate Derivatives by the Use of DBU/BSA" Natural Products Letters. 5. 41-46 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Sekine et al.: "New Method of Removal of Modifies Trityl and Pixyl Groups by Use of an Acid Species Generated by Reaction of Dethyl Oxamalonate with Methanol" Nucleosides&Nucleotides. 6&7. 1397-1414 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] T.Wada et al.: "2-Trimethylsilyl)etyl as a Phosphate Protecting Groups in Oligonucleotide Synthesis" Tetrahedron Letters. 35. 757-760 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Katahira et al.: "A Raman Spectroscopic Study on Conformations of DNA Oligomers:A Dominant Effect of an AA:TT Sequence over Those of AT:AT and TA:TA Sequences" Nuclesides&Nucleotides. 6&7. 1467-1482 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Sekine et al.: "Chemical Synthesis and Propertise of an Interresidually Cyclized Uridyly(3'-5')uridine as a model of tRNA Utum Structure Having a Sharp Bend" J.Am.Chem.Soc.116. 4469-4470 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] T.Wada et al.: "Synthesis and Propertise of N-Phosphorylated Nucleosides" J.Am.Chem.Soc.116. 9901-9911 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Sekine et al.: "Nucleo-cytoplasmic Transport of UsnRNPs:Definition of a Nuclear Location Signal in the Sm Core Domain that Binds a Transport" EMBO Journal. 12. 573-583 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Sekine et al.: "New 5'-Hydroxyl Protecting Groups for Rapid Internucleotidic Bond Formation" Tetrahedron Letters. 34. 8289-8292 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Sekine et al.: "Synthesis of a New Class of 2'-Phosphorylated Oligoribonucleotides Capable of Conversion to Oligoribonucleotides" Journal of Organic Chemistry. 58. 3204-3208 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] K.Nishikawa et al.: "Sequence Analysis of Low-Molecular-Weight RNAs by the Use of Non-Radioactive Labeling" Nucleic Acids Symposium Series. 29. 75-76 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Sekine et al.: "Chemical Synthesis of Branched Oligoribonucleotides and Their Related Compounds" Studies in Natural Products Chemistry. (印刷中).

    • Related Report
      1993 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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