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Study on DNA probe speciric for toxic dinoflagellate

Research Project

Project/Area Number 05660208
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field General fisheries
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

SAKO Yoshihiko  KYOTO Univ.FISHERIES,LECTURER, 農学部, 講師 (60153970)

Project Period (FY) 1993 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1994: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1993: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsToxic dinoflagellate / Alexandrium / Paralytic shellfish poisoning / Saxitoxin / Gonyautoxin / Molecular identification / DNA probe
Research Abstract

Toxic dinoflagellates Alexandrium catenella and A.tamarense produce potent neurotoxins responsible for paralytic shellfish poisoning (PSP) in coastal waters and cause serious economic and public health problems. However, the morphological taxonomy of these organisms remains controversial because of the very similar and changeable features. Accordingly, a simple and objective method for identification is a pressing need. In this study I attempted to identify these species by rDNA sequence and to develop DNA probe specific for each species. The results are as follows ;
(1) PSP toxins from many strains of A.tamarense and A.catenella were analyzed by HPLC-fluorometric analysis and the typical strains showing different toxin content and composition were selected for following studies.
(2) The 5.8SrDNA and flanking internal transcribed spacer (ITS1 and ITS2) from these strains were amplified using the PCR and subjected to restriction fragment-length polymorphism (RFLP) analysis. RFLP analysis of this region is useful for species discrimination.
(3) It was possible to discriminate both toxic species from non toxic ones by phylogenetic analysis using DNA sequence comparison of the 5.8SrDNA and ITS regions.
(4) The 3' end of ITS1 region (149-177bp) is definitely an effective DNA probe for the identification of toxic Alexandrium species.

Report

(3 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] M.Adachi: "The identification of conspecific dinoflagellates Alexandriun tamarense from Japan and Thailand by monoclonal antibodies." Nippon Suisan Gakkaishi. 59. 327-332 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] C.-H.Kim: "Comparison of toxic composition between populations of Alexandrium spp. from geographically distant area" Nippon Suisan Gakkaishi. 59. 641-646 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] S.Sawayama: "Inhibitory effects of concanavalin A and tunicamycun on sexual attachment of Alexandrium catenella(Dinophyceae)" J.Phycol. 29. 189-190 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Adachi: "Restriction fragment leghth polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in in Japanese Alexandrium species (Dinophyceae)" J.Phycol. 30. 857-863 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: "Studies on stability and heredity of PSP toxin composition in the toxic dinoflagellate Alexandrium" J.Phycol. (投稿予定).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Adachi: "Population analysis of dinoflagellate Alexandrium species using sequences of the 5.8S ribosomal DNA and internal transcribed spacer regions" J.Phycol. (投稿中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: "Toxic Phytoplankton Blooms in the Sea" Elsevier, 952 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: "Toxic Marine Phytoplankton" Elsevier(in press), (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Adachi: "The identification of conspecific dinoflagellates Alexandrium tamarense from Japan and Thailand by monoclonal antibodies" Nippon Suisan Gakkaishi. 59. 327-332 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] C.-H.Kim: "Comparison of toxic composition between populations of Alexandrium spp.from geographically distant area" Nippon Suisan Gakkaishi. 59. 641-646 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] S.Sawayama: "Inhibitory effects of concanavalin A and tunicamycin on sexual attachment of Alexandrium catenella (Dinophyceae)" J.Phycol. 29. 189-190 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Adachi: "Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae)" J.Phycol. 30. 857-863 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: "Studies on stability and heredity of PSP toxin composition in the toxic dinoflagellate Alexandrium" J.Phycol.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] M.Adachi: "Population analysis of dinoflagellate Alexandrium species using sequences of the 5.8S ribosomal DNA and internal transcribed spacer regions" J.Phycol.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: Toxic Phytoplankton Blooms in the Sea. Elsevier, 952 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Sako: Toxic Marine Phytoplankton. Elsevier (in press),

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] C.-H.Kim: "Variation of toxin production and compostition in axenic cultures of Alexandrium catenella and A.tamarense" Nippon Suisan Gakkaishi. 59. 633-639 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] C.-H.Kim: "Comparison of toxic composition between populations of Alexandrium spp.from geographically distant area" Nippon Suisan Gakkaishi. 59. 641-646 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Adachi: "Application of monoclonal an tibodies to field samples of Alexandrium species" Nippon Suisan Gakkaishi. 59. 1171-1175 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] S.Sawayama: "Inhibitory effect of edeine on game to genesis in Chlamydomonasreinhardtii" Nippon Suisan Gakkaishi. 59. 1805- (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Adachi: "Cross-reactivity of five monoclonal antibodies to various isolates of Alexandrium as determined by anindirectimmunofluorescencemethod" Nippon Suisan Gakkaishi. 59. 1807- (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Adachi: "Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species(Dinophyceae)." J.Phycol. 30. 857-863 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Sako: "Toxic Phytoplankton Blooms in the Sea" Elsevier, 952 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Sako: "Toxic Marine Phytoplankton" Elsevier(in press), (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] C.H.Kim: "Comparison of toxic composition between populations of Alexandrium spp.from geographically distant area" Nippon Suisan Gakkaishi. 59. 641-644 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Adachi: "Application of monoclonal antibodies to field samples of Alexandrium species" Nippon Suisan Gakkaishi. 59. 1171-1175 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Adachi: "Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in a Japanese Alexandrium species(Dinophyta)" J.Phycol.30(印刷中). (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Y.Sako: "Toxic Phytoplankton Blooms in the Sea" Elsevier, 952 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Y.Sako: "Toxic Marine Phytoplankton" Elsevier(印刷中), (1994)

    • Related Report
      1993 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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