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The X-ray Structure determination of Alkylated DNA Base Excision Repair Enzymes

Research Project

Project/Area Number 05671781
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field Physical pharmacy
Research InstitutionOsaka University

Principal Investigator

YAMAGATA Yuriko  Osaka University, Faculty of Pharmaceutical Sciences, Research Associate, 薬学部, 助手 (40183678)

Project Period (FY) 1993 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1994: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 1993: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsDNA Repair Enzyme / 3-Methyladenine-DNA Glycosylase / Three-dimensional Structure
Research Abstract

Escherichia coli has two DNA repair enzymes that liberate 3-methyladenine from DNA damaged by carcinogenic and/or mutagenic alkylating agents, namely 3-methyladenine-DNA Glycosylases I and II.They are distinguishable by their molecular sizes, enzymic properties and responses to alkylating agents. An adaptive DNA repair enzyme, 3-methyladenine-DNA glycosylase II,catalyzes the release of several alkylated bases in addition to 3-methyladenine. We have determined the three-dimensional structure of 3-methyladenine-DNA glycosylase II at a 2.3* resolution. The enzyme consists of three domains, one alpha+beta fold domain and two all alpha-helical domains. The comparison of amino acid sequence with those of Bacillus subtilis and Saccharomyces cerevisiae 3-methyladenine-DNA glycosylases and mutagenic studies allow to propose that the active site is located in a cleft between domains II and III.On the other hand, a constitutive enzyme 3-methyladenine-DNA glycosylase I releases only 3-methyladenine. The crystallization of 3-methyladenine-DNA glycosylase I is in progress.

Report

(3 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Y.Yamagata: "Conformation of 3-Substituted Purine Nucleoside by X-ray Crystallography and Theoretical Calculations" Nucleosides & Nucleotides. 13. 1327-1335 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] I.Teranishi: "Demethylation of O^6-Methylguanine-DNA Methyltransferase:Synthesis and Characterization of O^6,9-Dimethylguanine Coordinated with cis-Platin at the N7-Position" Chem.Pharm.Bull.42. 903-906 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] S.Fujii: "Novel Molecular Conformation of (R,S)-Hesperetin in Anhydrous Crystal" Chem.Pharm.Bull.42. 1143-1145 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] S.Asano: "Reaction of 9-Substituted 1-Aminoadenines with Nucleophiles and Syntheses of 3-Substituted 3H-Imidazo [4,5-e][1,2,4]triazolo[1,5-c][1,2,3]triazines" Nucleosides & Nucleotides. 13. 1453-1465 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] K.Ishiguro: "A 2-Pyrone Derivative from Hypericum japonium" Phytochem.37. 283-284 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Yamagata: "Model for a Recognition of 3-Methyladenine by 3-Methyladenine DNA Glycosylase" Chem Pharm.Bull.42. 2385-2387 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Masahiro Otsuchi: "Structure of p-Isopropyl-calix [4] arene-Toluene (1 : 1) Complex" Acta Cryst.C49. 639-641 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Masae Yamaki: "Blespirol, A Phenanthrene with A Spirolactone Ring from Bletilla striata" Phytochem.33. 1497-1498 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Isamu Terashima: "Demethylation of O^6-Methyl-guanine in DNA by O^6-Methylguanine-DNA Methyl-transferase : Synthesis and Characterization of O^6,9-Dimethylguanine Coordinated with cis-Platin at the N7-Position" Chem.Pharm.Bull.42. 903-906 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Satoshi Fujii: "Novel Molecular Conformation of (R,S)-Hesperetin in Anhydrous Crystal" Chem.Pharm.Bull.42. 1143-1145 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Yuriko Yamagata: "Conformation of 3-Substituted Purine Nucleoside Studied by X-Ray Crystallo-graphy and Theoretical Calculations" Nucleosides, Nucleotides. 13. 1327-1335 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Sholi Asano: "Reactions of 9-Substituted 1-Aminoadenines with Nucleophiles and Syntheses of 3-Substituted 3H-Imidazo [4,5-e] [1,2,4]-triazolo [1,5-c].[1,2,3].triazines" Nucleosides, Nucleotides. 13. 1453-1465 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kyoko Ishiguro: "A 2-Pyrone Derivative from Hypericum japonium" Phytochem.37. 283-284 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Isao Kitagawa: "Indonesian Medical Plants. XI.Chemical Structures of Caesaldekarins a and b, Two New Cassane-Type Furanoditerpenes from the Roots of Caesalpinia major (Fabaceae)" Chem.Pharm.Bull.42. 1798-1802 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Yuriko Yamagata: "Model for a Recognition of 3-Methyladenine by 3-Methyladenine DNA Glycosylase : The Stacking Interaction between 3-Methyladenine and Indole Rings" Chem.Pharm.Bull.42. 2385-2387 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Yamagata: "Conformation of 3-Substituted Purine Nucleoside Studied by X-Ray Crystallography and Theoretical Calculations" Nucleosides and Nucleotides. 13. 1327-1335 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] I.Teranishi: "Demethylation of O^6-Methylguanine-DNA Methyltransferase:Synthesis and Characterization of O^6,9-Dimethylguanine Coordinated with cis-Platin at the N7-Position" Chem.Pharm.Bull.42. 903-906 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] S.Fujii: "Novel Molecular Conformation of(R,S)-Hesperetin in Anhydrous Crystal" Chem.Pharm.Bull.42. 1143-1145 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] S.Asano: "Reaction of 9-Substituted 1-Aminoadenines with Nucleophiles and Syntheses of 3-Substituted 3H-Imidazo[4,5-e][1,2,4]triazolo[1,5-c][1,2,3]triazines" Nucleosides and Nucleotides. 13. 1453-1465 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] K.Ishiguro: "A 2-Pyrone Derivative from Hypericum japonium" Phytochem.37. 283-284 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Yamagata: "Model for a Recognition of 3-Methyadenine by 3-Methyladenine DNA Glycosylase" Chem.Pharm.Bull.42. 2385-2387 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] M.Otsuti et al.: "Structure of p-Isopropylcalix(4)arene-Toluene(1:1)Complex" Acta Crystallographica. C49. 639-641 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Yamaki et al.: "Blespirol,A Phenanthrene with a Spirolactone Ring from Bletilla Striata" Phytochemistry. 33. 1497-1498 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Y.Yamagata et al.: "Conformation of 3-Substituted Purine Nucleoside Studied by X-ray Crystallography and Theoretical Calculations" Nucleosides & Nucleotides. (in press). (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] S.Fujii et al.: "Novel Molecular Conformation of(R,S)-Hesperetin" Chem.Pharm.Bull.(in press). (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] I.Terashima et al.: "Demethylation of O^6-Methylguanine in DNA by O^6-Methylguanine-DNA Methyltransferase:Synthesis and Chracterization of O^6,9-Dimethylguanine that is Coordinated with eis-Platin at N7-Position" Chem.Pharm.Bull.(in press). (1994)

    • Related Report
      1993 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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