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Proton Pumping Mechanism in Bacteriorhodopsin-Analysis by Infrared Spectroscopy and Site-Divected Mutagenesis.

Research Project

Project/Area Number 06044123
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

MAEDA Akio  Kyoto University, 大学院・理学研究科, 教授 (20012370)

Co-Investigator(Kenkyū-buntansha) OTTOLENGHI Michael  The Hebrew University of Jerusalem, 物理化学教室, 教授
LANY Janos K  University of California, Irrine, アーバイン校・生理学生物物理学教室, 教授
KANDORI Hideki  Kyoto University, 大学院・理学研究科, 助手 (70202033)
Project Period (FY) 1994 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥6,700,000 (Direct Cost: ¥6,700,000)
Fiscal Year 1996: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1995: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1994: ¥2,300,000 (Direct Cost: ¥2,300,000)
Keywordsbacteriorhodopsin / mutants / FTIR / proton pump / chloride / water molecule / photoreaction / hydrogen-bond / 変異蛋白質 / FTIR / シッフ塩基 / レチナ-ル
Research Abstract

The Kyoto Group measured Fourier-transform infrared (FTIR) spectra of bacteriorhodopsin mutants, which were prepared by the American group, and rhodopsin upon photoreactions. The experimental plans were discussed among Kyoto, USA and Israel groups. Results obtained are summarized as follows.
(1) Upon formation of the M intermediate of bacteriorhodopsin, a proton is released from Glu204. FTIR spectroscopy revealed hydrogen-bonding network between Asp85 and Glu204. A water molecule is newly found to work in the Arg82-Glu204 region.
(2) FTIR spectroscopy was applied to examine hydrogen-bonding network in the Val49-Thr46-Asp96 region of the cytoplasmic side. Role of water molecules and peptide carbonyls in the structural changes in the L intermediate is revealed by use of mutants and isotope-labeled proteins.
(3) FTIR spectroscopy revealed a complex of a water molecule with a chloride ion in the active center of an anion-pumping bacteriorhodopsin mutant, D85T.
(4) Upon photoexcitation of rhodopsin, an intermediate called metarhodopsin-II activates transducin by specific protein-protein interaction. We invented a system to observe the spectra of the complex between metarhodopsin-II and transducin. The structural changes in the peptide backbone was detected.

Report

(4 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • 1994 Annual Research Report
  • Research Products

    (49 results)

All Other

All Publications (49 results)

  • [Publications] Yamazaki,Y.: "Hydrogen-Bonds of Water and C=O Groups Coordinate Long-Range Structural Changes in the L Photointermediate of Bacteriorhodopsin." Biochemistry. 35. 4063-4068 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hatanaka,M.: "Effects of Arginine-82 on the Interactions of Internal Water Molecules in Bacteriorhodopsin." Biochemistry. 35. 6308-6312 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Nishimura,S.: "Structural Changes in the Peptide Backbone in Complex Formation between Activated Rhodopsin and Transducin Studied by FTIR Spectroscopy." Biochemistry. 35. 13267-13271 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Chon,Y.-S.: "Hydration of the Counterion of the Schiff Base in the Chloride Transporting Mutant of Bacteriorhodopsin: FTIR and FT-Raman Studies on the Effects of Anion Binding when Asp85 is Replaced with a Neutral Residue." Biochemistry. 35. 14244-14250 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Richter,H.-T.: "Relationship of Retinal Configuration and Internal Proton Transfer at the End of the Bacteriorhodopsin Photocycle." Biochemistry. 35. 15461-15466 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda,A.: "Application of FT-IR spectroscopy to the structural study on the function of bacteriorhodopsin." Israel J.Chem.35. 387-400 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Nishimura,S.: "Structural Dynamics of Water and the Peptide Backbone around the Schiff Base Associated with the Light-Activated Process of Octopus Rhodopsin." Biochemistry. 36. 864-870 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda,A.: "Intramembrane Signaling Mediated by Hydrogen-Bonding of Water and Carboxyl Groups in Bacteriorhodopsin and Rhodopsin." J.Biochem.121(in press). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda,A.: "Membrane Proteins Structure,Function and Expression Control" Kyushu University Press, 9 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yamazaki, Y.: "Hydrogen-Bonds of Water and C=O Groups Coordinate Long-Range Structural Changes in the L Photointermediate of Bacteriorhodopsin." Biochemistry. 35. 4063-4068 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hatanaka, M.: "Effects of Arginine-82 on the Interactions of Internal Water Molecules in Bacteriorhodopsin." Biochemistry. 35. 6308-6312 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Nishimura, S.: "Structural Changes in the Peptide Backbone in Complex Formation between Activated Rhodopsin and Transducin Studied by FTIR Spectroscopy." Biochemistry. 35. 13267-13271 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Chon, Y.-S.: "Hydration of the Counterion of the Schiff Base in the Chloride Transporting Mutant of Bacteriorhodopsin : FTIR and FT-Raman Studies on the Effects of Anion Binding when Asp85 is Replaced with a Neutral Residue." Biochemistry. 35. 14244-14250 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Richter, H.-T.: "Relationship of Retinal Configuration and Internal Proton Transfer at the End of the Bacteriorhodopsin Photocycle." Biochemistry. 35. 15461-15466 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda, A.: "Application of FT-IR spectroscopy to the structural study on the function of bacteriorhodopsin." Israel J.Chem.35. 387-400 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Nishimura, S.: "Structural Dynamics of Water and the Peptide Backbone around the Schiff Base Associated with the Light-Activated Process of Octopus Rhodopsin." Biochemistry. 36. 864-870 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda, A.: "Intramembrane Signaling Mediated by Hydrogen-Bonding of Water and Carboxyl Groups in Bacteriorhodopsin and Rhodopsin." J.Biochem.121 (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Maeda, A.: Kyushu University Press. Internal water molecules in the functional process of bacteriorhodopsin and rhodopin., 213-222 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yamazaki,Y.: "Hydrogen-Bonds of Water and C=O Groups Coordinate Long-Range Structural Changes in the L Photointermediate of Bacteriorhodopsin." Biochemistry. 35. 4063-4068 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Hatanaka,M.: "Effects of Arginine-82 on the Interactions of Internal Water Molecules in Bacteriorhodopsin." Biochemistry. 35. 6308-6312 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Nishimura,S.: "Structural Changes in the Peptide Backbone in Complex Formation between Activated Rhodopsin and Transducin Studied by FTIR Spectroscopy." Biochemistry. 35. 13267-13271 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Chon,Y.-S.: "Hydration of the Counterion of the Schiff Base in the Chloride Transporting Mutant of Bacteriorhodopsin:FTIR and FT-Raman Studies on the Effects of Anion Binding when Asp85 is Replaced with a Neutral Residue." Biochemistry. 35. 14244-14250 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Richter,H.-T.: "Relationship of Retinal Configuration and Internal Proton Transfer at the End of the Bacteriorhodopsin Photocycle." Biochemistry. 35. 15461-15466 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Maeda,A.: "Application of FT-IR spectroscopy to the structural study on the function of bacteriorhodopsin." Israel J.Chem.35. 387-400 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Nishimura,S.: "Structural Dynamics of Water and the Peptide Backbone around the Schff Base Associated with the Light-Activated Process of Octopus Rhodopsin." Biochemistry. 36. 864-870 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Maeda,A.: "Intramembrane Signaling Mediated by Hydrogen-Bonding of Water and Carboxyl Groups in Bacteriorhodopsin and Rhodopsin." J.Biochem.121(in press). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Maeda,A.: "Membrane Proteins Structure,Function and Expression Control" Kyushu University Press, 9 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Sasaki,J.: "Conversion of bacteriorhodopsin into a chloride ion pump." Science. 269. 73-75 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Brown,L.S.: "The complex extracellular domain regulates the deprotonation and reprotonation of the retinal Schiff base during the bacteriorhodopsin photocycle." Biochemistry. 34. 12903-12911 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Varo,G.: "Light-driven chloride ion transport by halorhodopsin from Natronbacterium pharaonis. I. the photochemical cycle." Biochemistry. 34. 14490-14499 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Brown,L.S.: "Glutamic acid 204 is the terminal proton release qroup at the extracellular surflace of bacteriorhodopsin" J. Biol. Chem.270. 27122-27126 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kandori,H.: "FTIR spectroscopy reveals microscopic structural changes of the protein around the rhodopsin chromophore upon phctoisomerization." Biochemistry. 34. 14220-14229 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Nishimura,S.: "Structural changesin the lumirhodopsin-to-metarhodopsin I conversion of air-dried bovinerhodopsin." Biochemistry. 34. 16758-16763 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Yamazaki,Y.: "Interaction of tryptophan-182 with the retinal 9-methyl group in the L intermediate of bacteriorhodopsin." Biochemistry. 34. 577-582 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ohkita,Y.J.: "Changes in structure of the chromophore in the photochemical process of bovine rhodopsin as revealed by FTIR spectroscopy for hydrogen-outof-planev ibrations." Biophys. Chem.56. 71-78 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Cao,Y.: "Relationship of proton release at the extracellular surface to deprotonation of the schiff base in the bacteriorhodopsin photocycle." Biophys. J.68. 1518-1530 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kandori,H.: "Water-mediated proton transfer in proteins: An FTIR study of bacteriorhodopsin." J. Am. Chem.Soc.117. 2118-2119 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Sasaki,J.: "Nanosecond time-resolved infrared spectroscopy distinguishes two K species in the bacteriorhodopsin photocycle." Biophys. J.68. 2073-2080 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Yamazaki,Y.: "Water structural changes at the proton uptake site (the Thr46-Asp96 domain) in the L intermediate of bacteriorhodopsin." Biochemistry. 34. 7088-7093 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Maeda,A.: "Application of FTIR spectroscopy to the structural study on the function of bacteriorhodopsin (a review)." Ira. J,Chem.35(in press). (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Yamazaki,Y.: "Hydrogen-bonds of water and c=o groups coordinate long-range structural changes in the L photointermediate of bacteriohrodopsin." Biochemistry. 35(in press). (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Maeda,A.: "Interaction of aspartate-85 with a water molecule and the protonated Schiff base in the L intermediate of bacteriorhodopsin:A Fourier transform infrared spectroscopic study." Biochemistry. 33. 1713-1717 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Sasaki,J.: "Complete identification of C=O stretching vibrational bands of protonated aspartic acid residues in the difference infrared spectra of M and N intermediates versus bacteriorhodopsin." Biochemistry. 33. 3178-3184 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Brown,L.S.: "The proton transfers in the cytoplasmic domain of bacteriorhodopsin are facilitated by a cluster of interacting residues." J.Mol.Biol.239. 401-414 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Brown,L.S.: "The retinal Schiff base-counterion complex of bacteriorhodopsin:Changed geometry during the photocycle is a cause of proton transfer to aspartate 85." Biochemistry. 33. 12001-12011 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Kataoka,M.: "Energy coupling in an ion pump:the reprotonation switch of bacteriorhodopsin." J.Mol Biol.243. 621-638 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Yamazaki,Y.: "Interaction of tryptophan-182 with the retinal 9-methyl group in the L intermediate of bacteriorhodopsin." Biochemistry. 34. 577-582 (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Cao,Y.: "Relationship of proton release at the extracellular surface to deprotonation of the Schiff base in the bacteriorhodopsin photocycle." Biophys.J.(in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Kandori,H.: "Water-mediated proton transfer in proteins:An FTIR study of bacteriorhodopsin." J.Am.Chem.Soc.(in press). (1995)

    • Related Report
      1994 Annual Research Report

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Published: 1994-04-01   Modified: 2016-04-21  

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