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適応進化のメカニズムに関する分子集団遺伝学的研究

Research Project

Project/Area Number 06304002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section総合
Research Field 遺伝
Research InstitutionNational Institute of Genetics

Principal Investigator

HARADA Tomoko  National Institute of Genetics, Department of Population Genetics, Professor, 集団遺伝研究系, 教授 (80000256)

Co-Investigator(Kenkyū-buntansha) TACHIDA Hidenori  Kyusyu university, Faculty of Science, Associate Professor, 理学部, 助教授 (70216985)
TAKAHATA Naoyuki  The Graduate University for Advanced Studies, Coordination Center for Research a, 教育研究交流センター, 教授 (30124217)
TAKANO Toshiyuki  National Institute of Genetics, Department of Population Genetics, Research Asso, 助手 (90202150)
TAJIMA Fumio  University of Tokyo, Graduate School of Science, Professor, 大学院・理学系研究科, 教授 (30183065)
YAMAZAKI Tsuneyuki  Kyusyu University, Faculty of Science, Professor, 理学部, 教授 (10108649)
宮下 直彦  京都大学, 農学部, 助教授 (20212243)
松尾 義則  徳島大学, 総合科学部, 助教授 (80219401)
石和 貞男  お茶の水女子大学, 理学部, 教授 (20017205)
飯塚 勝  九州歯科大学, 歯学部, 助教授 (20202830)
Project Period (FY) 1994 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥30,900,000 (Direct Cost: ¥30,900,000)
Fiscal Year 1996: ¥8,200,000 (Direct Cost: ¥8,200,000)
Fiscal Year 1995: ¥10,900,000 (Direct Cost: ¥10,900,000)
Fiscal Year 1994: ¥11,800,000 (Direct Cost: ¥11,800,000)
KeywordsMolecular population genetics / Adaptive evolution / Neutral theory / Gene duplication / DNA polymorphism / Drosophila / Genetic variation / Population differentiation
Research Abstract

The development of the neutral theory in molecular evolution established that the majority of nucleotide substitutions occurred during the course of evolution are caused by random fixation of neutral mutations. On the other hand, we can see tremendous amount of diversity of organisms at the phenotypic level, many of which has been explained in terms of Darwinian adaptive evolution. Some of newly emerging molecular data are contradictory to the strict neutral mutation theory as well. The present study was carried out with an idea that adaptation was achieved by a relatively small number of changes such as gene duplication followed by functional diversity, amino-acid-alternating substitutions, and changes in regulatory regions. We successfully detected the effects of positive and negative natural selection from DNA sequence data combined with theoretical analysis based on the population genetics.
The recent advance of molecular biology has been accumulating diverse biological information such as high-order structure of proteins and gene interaction at very high rate, and also reveals the complication of genetic networks. Further advance of theoretical and experimental population genetics along this line will be needed to get a deep understanding of complicated evolution at the phenotypic and the molecular level.

Report

(4 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • 1994 Annual Research Report
  • Research Products

    (52 results)

All Other

All Publications (52 results)

  • [Publications] Tomoko Ohta: "The current significance and standing of neutral and nearly neutral theories." BioEssays. 18. 673-677 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Nobuyuki Inomata: "Adaptive evolution at the molecular level of the duplicated Amy gene system in Drosophila." J.Genetics. 75. 125-137 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Naoyuki Takahata: "Evolution of the primate lineage leading to modern humans : Phylogenetic and demographic inferences from DNA sequences." Proc.Natl.Acad.Sci.USA. (in press). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Fumio Tajima: "The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites." Genetics. 143. 1457-1465 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hidenori Tachida: "A population genetic study of the evolution of SINEs. II Sequence evolution under the master copy model." Genetics. 143. 1033-1042 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Naohiko Miyashita: "Intra-and interspecific variation of alcohol dehydrogenaselocus region in wild plants Arabisgemmifera and Arabidopsis thalian" Mol.Biol.Evol.13. 433-436 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Toshinori Endo: "Large-scale search for genes on which positive selection may operate." Mol.Biol.Evol.13. 685-690 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masaru Iizuka: "Average time until fixation of mutants with compensatory fitness interaction." Genes Genet.Syst.71. 167-173 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yasuo Ina: "Pattern of synonymous and nonsynonymous substitutions : An indicator of mechanisms of molecular evolution." J.Genet.75. 91-115 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yoshinori Matsuo: "Molecular evolution of the paired gene in Drosophila ; cloning and characterization of the partial paired gene from Drosophila willistoni." Biochem.Genet.(in press). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koichiro Tamura: "Model selection in the estimation of the number of nucleotide substitutions." Mol.Biol.Evol.11. 154-157 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hiroko Tominaga: "Sequence evolution of the Gpdh gene in the Drosophila virilis species group." Genetica. 96. 293-302 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Fumio Tajima: "Progress in Population Genetics and Human Evolution" Springer-Verlag,New York (in press), (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Toshiyuki Takano: "Current topics on molecular evolution" Inst.Mol.Evol.Genet.,The Pennsylvania State Univ.,USA/Graduate School for Advanced Studies,Hayama,Japan, 260 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ohta, T.: "The current significance and standing of neutral and nearly neutral theories." BioEssays. 18. 673-677 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Inomata, N.and Yamazaki, T.: "Adaptive evolution at the molecular level of the duplicated Amy gene system in Drosophila." J.Genetics. 75. 125-137 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Takahata, N.and Satta, Y.: "Evolution of the primate lineage leading to modern humans : Phylogenetic and demographic inferences from DNA sequences." Proc.Natl.Acad.Sci.USA. (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tajima, F.: "The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites." Genetics. 143. 1457-1465 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tachida, H.: "A population genetic study of the evolution of SINEs.II.Sequence evolution under the master copy model." Genetics. 143. 1033-1042 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Miyashita, N.T., Innan, H.and Terauchi, R.: "Intra-and interspecific variation of alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana." Mol.Biol.Evol.13. 433-436 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Endo, T., Ikeo, K.and Gojobori, T.: "Large-scale search for genes on which positive selection may operate." Mol.Biol.Evol.13. 685-690 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Iizuka, M.and Takefu, M.: "Average time until fixation of mutants with compensatory fitness interaction." Genes Genet.Syst.71. 167-173 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ina, Y.: "Pattern of synonymous and nonsynonymous substitutions : An indicator of mechanisms of molecular evolution." J.Genet.75. 91-115 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Matsuo, Y.: "Molecular evolution of the paired gene in Drosophila ; Cloning and characterization of the partial paired gene from Drosophila willistoni." Biochem.Genet.(in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tamura, K.: "Model selection in the estimation of the number of nucleotide substitutions." Mol.Biol.Evol.11. 154-157 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tominaga, H.and Narise, S.: "Sequence evolution of the Gpdh gene in the Drosophila virilis species group." Genetica. 96. 293-302 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tajima, F.: Estimation of the amount of DNA polymorphism and statistical tests of the neutral mutation hypothesis based on DNA polymorphism.In Progress in Population Genetics and Human Evolution, eds P.Donnelly and S.Tavare. Springer-Verlag, New York (in press), (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Takano, T.S.: Genetic study of species differences as observed as loss of bristles in interspecific hybrids of Drosophila.In Current topics on molecular evolution, eds.M.Nei and N.Takahata, pp255-260. Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, USA,The Graduate School for Advanced Studies, Hayama, Japan., (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tomoko Ohta: "The current significance and standing of neutral and nearly neutral theories." BioEssays. 18.8. 673-677 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Nobuyuki Inomata: "Adaptive evolution at the molecular level of the duplicated Amy gene system in Drosophila." J.Genetics. 75.1. 125-137 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Naoyuki Takahata: "Evolution of the primate lineage leading to modern humans : Phylogenetic and demographic inferences from DNA sequences." Proc.Natl.Acad.Sci.USA. (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Fumio Tajima: "The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites." Genetics. 143.3. 1457-1465 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Hidenori Tachida: "A population genetic study of the evolution of SINEs.II.Sequence evolution under the master copy model." Genetics. 143・2. 1033-1042 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Naohiko Miyashita: "Intra- and interspecific variation of alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana" Mol.Biol.Evol.13・2. 433-436 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Fumio Tajima: "Progress in Population Genetics and Human Evolution" Springer-Verlag,New York (in press), (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Toshiyuki Takano: "Current topics on molecular evolution" Inst.Mol.Evol.Genet.,The Pennsylvania State Univ.,USA/Graduate School for Advanced Studies,Hayama,Japan, 260 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Tomoko Ohta: "Synonymous and nonsynonymous subtitutions in mammalian genes and nearly the neutral theory." J Mol Evol. 40. 56-63 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Fumio Tajima: "Effect of non-random sampling on the estimation of parameters in population genetics" Genetical Research. 66. 267-276 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Nobuyuki Inomata: "Evolution of the response patterns to dietary carbohydrates and the developmental differentiation of gene expression of alpha-Amylase in Drosophila." J Mol Evol. 41. 1076-1084 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Nobuyuki Miyashita: "Intra-and interspecific variation of alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana." Mol.Biol.Evol.(in press).

    • Related Report
      1995 Annual Research Report
  • [Publications] H.Shibata: "Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup:concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation." Genetics. 141. 223-236 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Nobuyuki Inomata: "Evolutionary relationships and sequence variation of alpha-amylase variants encoded by duplicate genes in the Amy locus of Drosophila melanogaster." Genetics. 141. 237-244 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tomoko Ohta: "in Lecture Notes in Biomathematics 100 "Frontiers in Mathematical Biology"" Springer-Verlag, 174-185 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Fumio Tajima: "Mathematical Population Genetics" Springer-Verlag,New York(in press), (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tomoko Ohta: "Further examples of evolution by gene duplication revealed through DNA sequence comparisons." Genetics. 138. 1331-1337 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Fumio Tajima: "Estimation of evolutionary distance for reconstructing molecular phylogenetic trees." Molecular Biology and Evolution. 11. 278-286 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Takashi Gojobori: "Molecular evolution of serine protease and its inhibitor with special reference to domain evolution." Philosophical Transactions:Biological Sciences,The Royal Society. 344. 411-415 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Yasuo Ina: "Statistical analysis of nucleotide sequences of the hemagglutinin gene of human infleuenza A viruses." Proceedings of the National Academy of Sciences,U.S.A.91. 8388-8392 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Naohiko Miyashita: "Molecular variation in chloroplase DNA regions in ancestral species of wheat." Genetics. 137. 833-889 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hidenori Tachida: "Decay of linkage disequilibrium in a finite island model." Genetical Research. 64. 137-144 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Tomoko Ohta: "Early Life on Earth" Columbia University Press, 630 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] H.Kitakami: "Advances in Molecular Bioinformatics" IOS Press, 259 (1994)

    • Related Report
      1994 Annual Research Report

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Published: 1994-04-01   Modified: 2016-04-21  

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