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Activity blotting method for zymographical detection of DNA-modifying (repair) enzymes on electrophoresed gels

Research Project

Project/Area Number 06557013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section試験
Research Field Pathological medical chemistry
Research InstitutionOkayama University

Principal Investigator

SEKI Shuji  Okayama University Medical School ; Professor, 医学部, 教授 (50032884)

Co-Investigator(Kenkyū-buntansha) SARKER Altaf Hossan  Okayama University Medical School ; Research Assistant, 医学部, 助手 (20284060)
AKIYAMA Kosuke  Okayama University Medical School ; Research Assistant, 医学部, 助手 (30222540)
渡邉 晰子 (渡辺 晰子)  岡山大学, 医学部, 助手 (30093719)
Project Period (FY) 1994 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 1996: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1995: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 1994: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsActivity blotting method / Zymography / DNA repair enzyme / APEX nuclease / AP endonuclease / DNA 3' repair diesterase / DNase I / DNase I isozyme / 等電点電気泳動 / アイソザイム / 活性ブロッティング / ウエスタンブロッティング / ヒトグリオーマ細胞 / APEXヌクレアーゼ / DNA3′修復ジエステラーゼ / 活性ゲル / ゲル電気泳動
Research Abstract

Studies on DNA modifying (repair) enzymes provide us a lot of important information for understanding not only DNA metabolism but also mutation, carcinogenesis, aging, apoptosis and so on. By this project, an activity blotting method for zymological detection of DNA-modifying enzymes in various tissue or cell extracts electrophoresed on gels has been developed. The method consists of the following six steps : (1) preparation of crude, partially purified or purified enzymes ; (2) SDS- (denatured) or native (non-denatured) polyacrylamide gel electrophoresis (PAGE) of the enzyme preparations ; (3) renaturation of proteins electrophoresed on SDS-PAGE ; (4) preparation of damaged DNA-fixed membranes ; (5) protein blotting (activity blotting) onto a damaged DNA-fixed membrane, a process during which incision and/or excision are introduced to the damaged DNA by a repair enzyme (s) ; detection of the activity-blotted site (s) to localize the repair enzyme.
AP endonuclease and DNA 3' repair diesterase activities of APEX nuclease are semiquantitatively detected with high efficiency in tissue or cell extract by the present method. DNase I and enzymes having DNase I-like activity have also been able to detect semiquantitatively with high efficiency in various tissue or cell extracts by the present method. The activity blotting method has been applied effectively for DNA-modifying enzymes fractionated by isoelectric focussing gel electorophoresis (IEF-PAGE). Sensitive zymographical demonstration of isozyme patterns of DNase I in various tissue extracts was possible by IEF-PAGE-activity blotting.

Report

(4 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • 1994 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Ono, Yasuhiro: "Stable expression in rat glioma cells of sense and antisense nucleic acids to a human multifunctional DNA repair exnzyme,APEX nuclease." Mutation Research, DNA repair. 315. 55-63 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ono, Yasuhiro: "Relationship between expression of a major apurinic/apyrimidinic endonuclease(APEX nuclease)and susceptibility to genotoxic agents in human glioma cell lines." J.Neuro-Oncology. 25. 183-192 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sarker, A.H.: "Oxygen radical-induced single-strand DNA breaks and repair of the damage in a cell-free system." Mutation Research. 337. 85-95 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sarker A.H.: "Purification and characterization of an AP endonuclease/DNA3′repair diesterase from mouse ascites sarcoma cells." Biochim.Biopys.Acta. 1245. 299-304 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tan Yunshan: "cDNA cloning of rat major AP endonuclease(APEX nuclease)and analyses of its mRNA expression in rat tissues" Acta Med.Okayama. 50. 53-60 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Wakabayashi, Hajime: "Purification and characterization of a 39 kDa apurinic/apyrimidinic endonuclease from mouse ascites sarcoma cells." Acta Med. Okayama. 50. 131-137 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ono, Y., Furuta, T., Ohmoto, T., Akiyama, K.and Seki, S.: "Stable espression in rat glioma cells of sense and antisense nucleic acids to a human multifunctional DNA repair exnzyme, APEX nuclease." Mutation Research, DNA repair. 315. 55-63 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ono, Y., Matsumoto, K., Furuta, T., Ohmoto, T., Akiyama, K.and Seki, S.: "Relationship between expression of a major apurinic/apyrimidinic endonuclease (APEX nuclease) and susceptibility to genotoxic agents in human glioma cell lines." J.Neuro-Oncology. 25. 183-192 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sarker, A.H., Watanabe, S., Seki, S., Akiyama, T.and Okada, S.: "Oxygen redical-induced singel-strand DNA breaks and repair of the damage in a cell-free system." Mutation Research. 337. 85-95 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sarker, A.H., Watanabe, S., Akiyama, K., Nakagawa, Y., Wakabayashi, H., Tan, Y.and Seki, S.: "Purification and characterization of an AP endonuclease/DNA 3' repair diesterase from mouse ascites sarcoma cells." Biochim.Biopys.Acta.1245. 299-304 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tan, Y., Nakagawa, Y., Akiyama, K., Wakabayashi, H., Sarker, A.H.and Seki, S.: "cDNA cloning of rat major AP endonuclease (APEX nuclease) and analyzes of its mRNA expression in rat tissues." Acta Med.Okayama. 50. 53-60 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Wakabayashi, H., Tsuji, T., and Seki, S.: "Purification and Characterization of a 39kDa apurinic/apyrimidinic endonuclease from mouse ascites sarcoma cells." Acta Med.Okayama. 50. 131-137 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Wakabayashi,Hajime: "Purification and characterization of a 39 apurinic / apyrimidinic endonuclease from mouse ascites sarcoma cells." Acta Med.Okayama. 50・3. 131-137 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Tan,Yunshan: "cDNA cloning of rat major AP endonuclease (APEX nuclease) and analyses of its mRNA expression in rat tissues." Acta Med.Okayama. 50・1. 53-60 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Tsutsui,Ken: "Subdomain structire of the matrix attachment region located within the mouse immunoglobulin k gene intron." Biochem.Biophys.Res.Commun.222・2. 472-477 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 関 周司: "DNA修復とレドックス制御系" 別冊・医学のあゆみ ストレス応答とレドックス制御. 104-108 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akiyama, Kosuke: "Cloning, sequence analysis, and chromosomal assignment of the mouse Apex gene." GENOMICS. 26. 63-69 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ono, Yasuhiro: "Developmental expression of APEX nuclease, a multifunctional DNA repair enzyme, in mouse brains." Developmental Brain Res.86. 1-6 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ono, Yasuhiro: "Relationship between expression of a major apurinic/apyrimidinic endonuclease (APEX nuclease) and susceptibility to genotoxic agents in human glioma cell lines." J. Neuro-Oncology. 25. 183-192 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Sarker, Altaf H.: "Oxygen radical-induced single-strand DNA breaks and repair of the damage in a cell-free system." Mutat. Res.337. 85-95 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Sarker, Altaf H.: "Purification and characterization of an AP endonuclease/DNA 3´repair diesterase from mouse ascites sarcoma cells." Biochim. Biopys. Acta. 1245. 299-304 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Mitomo,K.,他5名: "Two different cellular redox systems regulate the DNA-binding activity of the p50 subunit of NF-kB in vitro." Gene. 145. 197-203 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Akiyama,K.,他3名: "Structure,promoter analysis and chromosomal assignment of the human APEX gene." Biochim.Biophys.Acta. 1219. 15-25 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Ono,Y.,他4名: "Stable expression in rat glioma cells of sense and antisense nucleic acids to a human multifunctional DNA repair enzyme,APEX nuclease." Mutation Research,DNA rapair. 315. 55-63 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hongo,A.,他3名: "A comparison of in vitro platinum-DNA adduct formation between carboplatin and cisplatin." Int.J.Biochem.26. 1009-1016 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 秋山公祐、他6名: "非放射性ザイモグラフ(活性ブロッティング)法によるDNA修飾酵素の検出" 第17回日本分子生物学会年会講演要旨集. 17. 468 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Akiyama,K.,他5名: "Cloning,sequence analysis and chromosomal assignment of the mouse Apex gene." GENOMICS. (in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Ono,Y.,他6名: "Developmental expression of APEX nuclease,a multifunctional DNA repair enzyme,in mouse brains." Developmental Brain Res.(in press). (1995)

    • Related Report
      1994 Annual Research Report

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Published: 1994-04-01   Modified: 2016-04-21  

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