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Isolation and characterization of new markers for human brain tumors using molecular biological techniques

Research Project

Project/Area Number 06557078
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section試験
Research Field Cerebral neurosurgery
Research InstitutionNiigata University

Principal Investigator

USUI Hiroshi  Brain Res.Inst., Niigata Univ., Research Associate, 脳研究所, 助手 (20192510)

Co-Investigator(Kenkyū-buntansha) WASHIYAMA Kazuo  Brain Res.Inst., Niigata Univ., Associate Professor, 脳研究所, 助教授 (00183715)
KUMANISHI Toshiro  Brain Res.Inst., Niigata Univ., Professor, 脳研究所, 教授 (40018601)
Project Period (FY) 1994 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥17,700,000 (Direct Cost: ¥17,700,000)
Fiscal Year 1996: ¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 1995: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 1994: ¥9,000,000 (Direct Cost: ¥9,000,000)
Keywordsbrain tumor / tumor marker / gene expression / cDNA cloning / brain development / onco-fetal antigen / glioma / genemutation / onco‐fetal antigen / differential screening
Research Abstract

In this research project, we first established improved molecular biological procedures for efficient isolation of cDNA clones of differentially expressed mRNAs from small materials : (1) modified differential screening procedure, (2) directional tag PCR subtraction, an efficient subtractive cDNA cloning procedure, and (3) cDNA library DNA-Southern blot procedure which can replace Northern blot analysis.
Using these procedures, we successfully isolated 22 distinct rat cDNA clones whose corresponding mRNAs were preferentially expressed in the fetal brain during the brain development. We then isolated their human homologues and analyzed the mRNA expressions in various human tissues. We found that the expression pattern of the human neuronatin was notable. The neuronatin mRNA was selectively expressed in fetal human brain among normal human tissues and in human pituitary adenomas among various human brain tumors, suggesting the utilization as a new marker for the pituitary adenomas. We also analyzed the mRNA patterns of human glioma cell lines exhibiting different biological characters using the procedures described above. We identified 9 cDNA clones whose corresponding mRNAs were expressed more abundantly in the cells which showed hetero-transplantability and higher growth rate than the control cells. These cDNA clones included novel clones and those involved in the protein synthesis, signal transduction, and nucleotide metabolism. These findings showed that our improved procedures are useful to analyze molecular basis of tumor cells and to identify new tumor markers.
In addition, we analyzed gene mutations in human brain tumors to understand the molecular backgrounds of different mRNA expressions, and found frequent gene mutations of tumor suppressor genes, such as p53 and p16, in human brain tumors.

Report

(4 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • 1994 Annual Research Report
  • Research Products

    (47 results)

All Other

All Publications (47 results)

  • [Publications] Usui, H.: "Isolation of cDNA clones of the rat mRNAs expressed preferentially in the prenatal stages of brain development" Dev. Brain Res.97. 185-193 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tsumanuma, I.: "Infrequent mutation of Wafl/p21 gene, a CDK inhibitor gene, in brain tumors" Neurol. Med. Chir.37. 150-157 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Washiyama, K.: "Neurotrophin and neurotrophin receptor proteins in medulloblastomas and other primitive neuroectodermal tumors of the pediatric central nervous system" Am. J. Pathol.148. 929-940 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Analysis of p53 gene mutations in human glioma cell lines" Brain Tumor Pathol.13. 1-10 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kumanishi, T.: "Primary malignant lymphoma of the brain : Demonstration of frequent p16 and p15 gene deletions" Jpn. J. Cancer Res.87. 691-695 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Zhang, S.: "A comparative study of glioma cell lines for p16, p15, p53 and p21 gene alteration" Jpn. J. Cancer Res.87. 900-907 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Feng, X.: "Intracranial germ cell tumors : Detection of p53 gene mutations by single-strand conformation polymorphism (SSCP) analysis" Jpn. J. Cancer Res.86. 555-561 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tsumanuma, I: "The analysis of p53 tumor suppresspor gene in pineal parenchymal tumors" Brain Tumor Pathol.12. 39-43 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 古閑比佐志: "脳腫瘍に於けるp53癌抑制遺伝子の変異" 脳と神経. 47. 845-855 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Usui, H.: "Isolation of clones of rat striatum-specific mRNAs by directional tag PCR subtraction" J. Neurosci.14. 4915-4926 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Primary malignant lymphoma of the brain : demonstration of the p53 gene mutations by PCR-SSCP analysis and immunohistochemistry" Brain Tumor Pathol.11. 151-155 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Analysis of p53 gene mutations in low and high grade astrocytomas by PCR-SSCP and immunohistochemistry" Acta Neuropathol.87. 225-232 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kilduff, T. S.: "Molecular Regulation of Conscious State" CRC Press (in press), (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 熊西 敏郎: "現代病理学体系" 中山書店, 17 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 熊西 敏郎: "タンパク質化学" 廣川書店, 5 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Usui, H.: "Isolation of cDNA clones of the rat mRNAs expressed preferentially in the prenatal stages of brain development" Dev.Brain Res.97. 185-193 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tsumanuma, I.: "Infrequent mutation of Waf1/p21 gene, a CDK inhibitor gene, in brain tumors" Neurol.Med.Chir.37. 150-157 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kilduff, T.S.: "Isolation and identification of specific transcripts by subtractive hybridization" in : Molecular Regulation of Conscious State, CRC Press. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Washiyama, K.: "Neurotrophin and neurotrophin receptor proteins in medulloblastomas and other primitive neuroectodermal tumors of the pediatric central nervous system" Am.J.Pathol.148. 929-940 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Analysis of p53 gene mutations in human glioma cell lines" Brain Tumor Pathol.13. 1-10 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kumanishi, T.: "Primary malignant lymphoma of the brain : Demonstration of frequent p16 and p15 gene deletions" Jpn.J.Cancer Res.87. 691-695 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Zhang, S.: "A comparative study of glioma cell lines for p16, p15, p53 and p21 gene alteration" Jpn.J.Cancer Res.87. 900-907 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Feng, X.: "Intracranial germ cell tumors : Detection of p53 gene mutations by single-strand conformation polymorphism (SSCP) analysis" Jpn.J.Cancer Res.86. 555-561 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kumanishi, T.: "Tumor suppressor genes and human brain tumors (Japanese)" in : Current Encyclopedia of Patholgy. : Nakayama Publishing Come.257-273 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tsumanuma, I.: "The analysis of p53 tumor suppresspor gene in pineal parenchymal tumors" Brain Tumor Pathol.12. 39-43 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "p53 tumor suppressor gene mutations in human brain tumors (Japanese)" Brain and Nerve. 47. 845-855 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kumanishi, T.: "Glial fibrillary acidic protein ; GFAP (Japanese)" in : Protein Chemistry-Molecular Structures and Functions-vol.14 : Hirokawa Publishing Comp.3-8 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Usui, H.: "Isolation of clones of rat striatum-specific mRNAs by directional tag PCR subtraction." J.Neurosci.14. 4915-4926 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Primary malignant lymphoma of the brain : demonstration of the p53 gene mutations by PCR-SSCP analysis and immunohistochemistry" Brain Tumor Pathol.11. 151-155 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Koga, H.: "Analysis of p53 gene mutations in low and high grade astrocytomas by PCR-SSCP and immunohistochemistry" Acta Neuropathol.87. 225-232 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Usui,H.: "Isolation of cDNA clones of the rat mRNAs expressed preferentially in the prenatal stages of brain development" Dev.Brain Res.97. 185-193 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Nagai,S.: "Identification of differentially expressed mRNAs between two astrocytic tumor cell lines derived from the same patient" Human Cell. 9. 89 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Washiyama,K.: "Neurotrophin and neurotrophin receptor proteins in medulloblastomas and other Primitive neuroectodermal tumors of the pediatric central nervous system" Am.J.Pathol.148. 929-940 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Koga,H.: "Analysis of p53 gene mutations in human glioma cell lines" Brain Tumor Pathol.13. 1-10 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kumanishi,T.: "Primary malignant lymphoma of the brain : Demonstration of frequent p16 and p15 gene deletions" Jpn.J.Cancer Res.87. 691-695 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Zhang,S.: "A comparative study of glioma cell lines for p16,p15,p53 and p21 gene alteration" Jpn.J.Cancer Res.87. 900-907 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kilduff,T.S.: "Molecular Regulation of Conscious State" CRC Press (in press), (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 熊西敏郎: "現代病理学体系" 中山書店, 17 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 薄井宏: "胎生期ラット脳に選択的に発現する遺伝子群の単離と解析" Neuropathology. 15(supple). 94 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ikeda,K.: "Functional coupling of the σ‐and the κ‐opioid receptors with the G‐protein‐activated K+channel." Biochem.Biophys.Res.Commun.208(1). 302-308 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Usui,H.: "Isolation and of clones of rat striatum‐specitic mRNAs by directional tag PCR subtraction." J.Neurosci.14(8). 4915-4926 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Falk,J.D.: "Identification and characterization of transcribed sequences on human chromosome 9q32‐34" J.Mol.Neurosci.5(3). 165-179 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] 薄井宏: "新しいcDNAサブトラクション法(Directional tag PCR subtraction法)を用いた“線状体特異的"cDNAクローンの単離" Neuropathology. 14(supple). 204 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Motoyama,T.: "Functional and morphorogical effects of tumor necrosis factor α in an interleukin 6‐inducing pulmonary large cell carcinoma with sarcomatoid features." Virchows Archiv. 424. 361-366 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] 熊西敏郎: "廣川タンパク質化学第9巻脳神経タンパク質、接着タンパク質" グリア線維性酸性タンパク質(glial fibrillary acidic protein;(GFAP), 5 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Usui,H.et.al.: "Isolation and characterization of the genes expressed selectively in the fetal rat brain" Neuropathology. (in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Usui,H.et.al.: "Isolation and of rat striatum-specific mRNAs by directional tag PCR subtraction." The Journal of Neuroscience. 14. 4915-4926 (1994)

    • Related Report
      1994 Annual Research Report

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Published: 1994-04-01   Modified: 2016-04-21  

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