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Relationship between thermal stability and Protein dynamics of an enzyme

Research Project

Project/Area Number 07044185
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionTokyo University of Pharmacy & Life Science

Principal Investigator

OSHIMA Tairo  Tokyo Univ.Pharm & Life Sci., Dept of Molecular Biol., Professor, 生命科学部, 教授 (60167301)

Co-Investigator(Kenkyū-buntansha) ZAVODSZKY Peter  Hungarian Acad.Sci., Inst.Enzymology, 酵素研究所, 教授
PETSKO Gregory  Dept.Biochem., Brandeis University, 生化学科, 教授
YAMAGISHI Akihiko  Dept.Mol.Biol., Tokyo Univ.Pharm.& Life Sci., 生命科学部, 助教授 (50158086)
TANAKA Nobuo  Dept.Life Sci., Tokyo Institute of Technology, 生命理工学部, 教授 (50032024)
ZAVODSZKY Pe  ハンガリー科学アカデミー生化学研究所, 教授
PETSKO Grego  Brandeis大学, 生化学科, 教授
Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1996: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1995: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsIsopropylmalate dehydrogenase / Extreme thermophile / Stabilization of a protein / Crystallography / Chimerie enzyme / 進化分子工学 / イソプロピルリンゴ酸デヒドロゲナーゼ / タンパク質安定性 / タンパク質結晶構造 / 好熱性細菌 / 部位特異的変異 / タンパク質構造機能相関
Research Abstract

An international collaboration between Japan, the United States, and Hungary, has been carried out to clarify the molecular reason why thermophile enzymes are unusually resistant to heat using isopropylmalate dehydrogenase as a model enzyme. The collaboration has been successfully achieved and parts of the results are summarized in international joint papers which will be appeared in scientific journals soon.
1 Molecular design to stabilize chimeric isopropylmalate dehydrogenase between an extreme thermophile (Thermus thermophilus) and a mesophile (Bacillus subtilis) has been done and many stabilized mutants were prepared in the Japanese laboratories. Some of them was distributed among the members.
2 X-ray crystallographic analyzes at low temperature were done in both the US and a Japanese laboratories under close contacts.
3 Molecular cloning of E.coli leuB gene has been done in Japan and distributed to other members. Purification of the enzyme was carried out in Japan by the co-operation of a US and a Japanese researchers. X-ray crystallographic analysis was achieved in the US.Using this cloned gene and 3-D structure, molecular design of the stabilization was done in the US and Hungary.
4 In the Japanese laboratories, the stabilization of the E.coli enzyme has been attempted by using evolutionary molecular engineering techniques.
5 Adaptation of the thermophile enzyme to the mesophilic temperature has been tried in both the US and a Japanese laboratories under close communications. In the Japanese laboratory, an integration-expression system has been constructed and mesophilic temperature-adapted mutants were obtained. Structural analyzes of the mutants are now under way.
6 A researcher from the US visited the Japanese laboratories and joint experiments were carried out. Two Japanese scientists visited the US to discuss the experimental results.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (43 results)

All Other

All Publications (43 results)

  • [Publications] Tomomi FUJII,Yasuo HATA,Takayoshi WAKAGI,Nobuo TANAKA,and Tairo OSHIMA: "Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins." Nature Str.Biol.3(10). 834-837 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Chikahiro NAGTA,Hideaki MORIYAMA,Nobuo TANAKA,Masayoshi NAKASAKO,Masaki YAMAMOTO,Tatsuo UEKI,and Tairo OShima: "Cryocrystallography of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus and its Chimeric enzyme." Acta Cryst.D52. 623-630 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yoko HAYASHI-IWASAKI,Koishi NUMATA,Akihiko YAMAGISHI,Katsuhide YUTANI,Masahiro SAKURAI,Nobuo TANAKA,and Tairo OSHIMA: "A Stable Intermediate in the Thermal Unfolding Process of a Chimeric 3-Isopropylmalate Dehydrogenase Between a Thermophilic and a Mesophilic Enzymes." Protein Sci.5. 511-516 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Qian ZHANG,Toshio IWASAKI,Takayoshi WAKAGI,and Tairo OSHIMA: "2-Oxoacid : ferredoxin oxidoreductase from the thermoacidophilic archaeon,Sulfolobus sp.strain 7." J.Biochem.120(3). 587-599 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Akihiko YAMAGISHI,Tomoaki TANIMOTO,Toshiharu SUZUKI,and Tairo OAHIMA: "Primidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile,Thermus thermophilus." Appl.Environ.Microbiol.62(6). 2191-2194 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Akihiro OKAMOTO,Ryuichi KATO,Ryoji MASUI,Akihiko YAMAGISHI,Tairo OSHIMA,and Seiki KURAMITSU: "An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium,Thermus thermophilus HB8." J.Biochem.119(1). 135-144 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Gerlind WALLON,Susan T.LOVETT,Tairo OSHIMA,Dag RINGE,and Gregory PETSKO: "Crystal structure of escherichia coli 3-isoproylmalate dehydrogenase and comparison with its thermophilic counterpart from Thermus thermophilus" Submitted.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Gerlind WALLON,Kazutaka YAMAMOTO,Hiromi KIRINO,Akihiko YAMAGISHI,Susan T.LOVETT,Gregory PETSKO,and Tairo OSHIMA: "Purification,catalytic properties and thermostability of 3-isopropylmalate dehydrogenase from E.coli" Biochim.Biophys.Acta in press.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masami ISHIDA and Tairo OSHIMA: "A leader open reading frame is essential for the expression of GC rich leuB gene of an extreme thermophile,Thermus thermophilus,in Escherichia coli." FEMS Microbiol.Letter. 135(1). 137-142 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Shojiro KADONO,Masahiro SAKURAI,Hideaki MORIYAMA,Mamoru SATO,Yoko HAYASHI,Tairo OSHIMA,and Nobuo TANAKA: "Ligand-Induced Changes in the Conformation of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus." J.Biochem.118(4). 745-752 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masahiro SAKURAI,Hideaki MORIYAMA,Ko ONODERA,Shojiro KADONO,Koichi NUMATA,Yoko HAYASHI,Jitsutaro KAWAGUCHI,Akihiko YAMAGISHI,Tairo OSHIMA,and Nobuo TANAKA: "The crystal structure of thermostable mutants of chimeric 3-isopropylmalate dehydrogenase,2T2M6T." Protein Engng.8(8). 763-767 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hideaki MORIYAMA,Ko ONODERA,Masahiro SAKURAI,Nobuo TANAKA,Hiromi KIRINO-KAGAWA,Tairo OSHIMA,and Yukiteru KATSUBE: "The Crystal Structures of Mutated 3-Isopropylmalate Dehydrogenase from Thermus thermophilus HB8 and Their Relationship to the Thermostability of the Enzyme." J.Biochem.117(2). 408-413 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Gerlind WALLON,Susan T.LOVETT,Tairo OSHIMA,Dagmar RINGE,and Gregory PETSKO: "Crystal structure of escherichia coli 3-isoproylmalate dehydrogenase and comparison with its thermophilic counterpart from Thermus thermophilus" (Submitted).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Gerlind WALLON,Kazutaka YAMAMOTO,Hiromi KIRINO,Akihiko YAMAGISHI,Susan T.LOVETT,Gregory PETSKO,and Tairo OSHIMA: "Purification, catalytic properties and thermostability of 3-isopropylmalate dehydrogenase from E.coli" Biochim, Biophys.Acta. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tomomi FUJII,Yasuo HATA,Takayoshi WAKAGI,Nobuo TANAKA,and Tairo OSHIMA (1996): "Novel zinc-binding center in thermoacidophilic archaeal ferredoxins." Nature Str.Biol.3 (10). 834-837 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Chikahiro NAGTA,Hideaki MORIYAMA,Nobuo TANAKA,Masayoshi NAKASAKO,Masaki YAMAMOTO,Tatsuo UEKI,and Tairo OSHIMA: "Cryocrystallography of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus and its Chimeric enzyme." Acta Cryst.D52. 623-630 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yoko HAYASHI-IWASAKI,Koishi NUMATA,Akihiko YAMAGISHI,Katsuhide YUTANI,Masahiro SAKURAI,Nobuo TANAKA,and Tairo OSHIMA: "A Stable Intermediate in the Thermal Unfolding Process of a Chimeric 3-Isopropylmalate Dehydrogenase Between a Thermophilic and a Mesophilic Enzymes." Protein Sci.5. 511-516 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Qian ZHANG,Toshio IWASAKI,Takayoshi WAKAGI,and Tairo OSHIMA: "2-Oxoacid : ferredoxin oxidoreductase from the thermoacidophilic archaeon, Sulfolobus sp.strain 7." J.Biochem.120 (3). 587-599 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Akihiko YAMAGISHI,Tomoaki TANIMOTO,Toshiharu SUZUKI,and Tairo OSHIMA: "Primidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus." Appl.Environ.Microbiol.62 (6). 2191-2194 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Akihiro OKAMOTO,Ryuichi KATO,Ryoji MASUI,Akihiko YAMAGISHI,Tairo OSHIMA,and Seiki KURAMITSU: "An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium, Thermus thermophilus HB8." J.Biochem.119 (1). 135-144 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masami ISHIDA and Tairo OSHIMA: "A leader open reading frame is essential for the expression of GC rich leuB gene of an extreme thermophile, Thermus thermophilus, in Escherichia coli." FEMS Microbiol.Letter.135 (1). 137-142 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Shojiro KADONO,Masahiro SAKURAI,Hideaki MORIYAMA,Mamoru SATO,Yoko HAYASHI,Tairo OSHIMA,and Nobuo TANAKA: "Ligand-Induced Changes in the Conformation of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus." J.Biochem.118 (4). 745-752 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Hideaki MORIYAMA,Ko ONODERA,Masahiro SAKURAI,Nobuo TANAKA,Hiromi KIRINO-KAGAWA,Tairo OSHIMA,and Yukiteru KATSUBE: "The Crystal Structures of Mutated 3-Isopropylmalate Dehydrogenase from Thermus thermophilus HB8 and Their Relationship to the Thermostability of the Enzyme." J.Biochem.117 (2). 408-413 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masahiro SAKURAI,Hideaki MORIYAMA,Ko ONODERA,Shojiro KADONO,Koichi NUMATA,Yoko HAYASHI,Jitsutaro KAWAGUCHI,Akihiko YAMAGISHI,Tairo OSHIMA,and Nobuo TANAKA: "The crystal structure of thermostable mutants of chimeric 3-isopropylmalate dehydrogenase, 2T2M6T." Protein Engng.8 (8). 763-767 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tomomi FUJII,Yasuo HATA,Takayoshi WAKAGI,Nobuo TANAKA,and Tairo OSHIMA: "Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins." Nature Str.Biol.,. 3(10). 834-837 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Chikahiro NAGATA,Hideaki MORIYAMA,Nobuo TANAKA,Masayoshi NAKASAKO,Masaki YAMAMOTO,Tatsuo UEKI,and Tairo OSHIMA: "Cryocrystallography of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus and its Chimeric enzyme." Acta Cryst.,. D52. 623-630 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yoko HAYASHI-IWASAKI,Koishi NUMATA,Akihiko YAMAGISHI,Katsuhide YUTANI,Masahiro SAKURAI,Nobuo TANAKA,and Tairo OSHIMA: "A Stable Intermediate in the Thermal Unfolding Process of a Chimeric 3-Isopropylmalate Dehydrogenase Between a Thermophilic and a Mesophilic Enzymes." Protein Sci.,. 5. 511-516 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Qian ZHANG,Toshio IWASAKI,Tkayoshi WAKAGI,and Tairo OSHIMA: "2-Oxoacid : ferredoxin oxidoreductase from the thermoacidophilic archaeon, Sulfolobus sp.strain 7." J.Biochem.,. 120(3). 587-599 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akihiko YAMAGISHI,Tomoaki TANIMOTO,Toshiharu SUZUKI,and Tairo OAHIMA: "Primidine biosynthesis genes(pyrE and pyrF)of an extreme thermophile,Thermus thermophilus." Appl.Environ.Microbiol.,. 62(6). 2191-2194 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akihiro OKAMOTO,Ryuichi KATO,Ryoji MASUI,Akihiko YAMAGISHI,Tairo OSHIMA,and Seiki KURAMITSU: "An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium,Thermus thermophilus HB8." J.Biochem.,. 119(1). 135-144 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yoko HAYASHI-IWASAKI,et al.: "A Stable Intermediate in the Thermal Unfoling Process of a Chimeric 3-Isopropylmalate Dehydrogenase Between a Thermophilic and a Mesophilic Enzymes." Protein Sci.,in press. (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Takashi KOTSUKA,et al.: "Further Stabilization of 3-Isopropylmalate Dehydrogenase of an Extreme Thermophile,Thermus thermophilus,by a Suppressor Mutation Method." J.Bacteriol.,. 178. (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Masami ISHIDA and Tairo OSHIMA: "A leader open reading frame is essential for the expression of GC rich leuB gene of an extreme thermophile,Thermus thermophilus,in Escherichia coli." FEMS Microbiol.Letter,. 135. 137-142 (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Shojiro KADONO,et al.: "Ligand-Induced Changes in the Conformation of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus." J.Biochem.,. 118[4]. 745-752 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Masato OHZEKI,et al.: "Crystallization and Preliminary X-Ray Studies of Isocitrate Dehydrogenase from Thermus thermophilus HB8." J.Biochem.,. 118[4]. 679-680 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Masatada TAMAKOSHI,Akihiko YAMAGISHI,and Tairo OSHIMA: "Screening of Stable Proteins in an Extreme Thermophile,Thermus thermophilus." Mol.Microbiol.,. 16 (5),. 1031-1036 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Moriyoshi YASUDA,et al.: "Morphological Variation of New Thermoplasma acidophilum Isolates from Japanese Hot Springs." Appl.Environ.Microbiol.,. 61 (9),. 3482-3485 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Emiri YODA,et al.: "Purification and Characterization of 3-Isopropylmalate dehydrogenase from a Thermoacidophilic Archaebacterium,Sulfolobus sp.Strain 7." FEMS Microbiol.Letters,. 131. 243-247 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tetsuya AOYAMA,et al.: "Synthesis of DL-threo-3-(1-fluoro-1-methylethyl)-abd DL-threo-3-(1,1-difluoroethyl)-malic acids. Mechanistic studies of 3-isopropylmalate dehydrogenase." J.Chem.Soc.Perkin Trans.1,. 1905-1912 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Takuro YAOI,et al.: "His273 of 3-isopropylmalate dehydroigenase from Thermus thermophilus HB8 is involved in the coenzyme binding." Biochem.Biophys.Res.Commun.,. 210,. 733-737 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Koichi NUMATA,et al.: "Thermal Stability of Chimeric Isopropylmalate Dehydrogenases Constructed from a Thermophile and a Mesophile Genes." Protein Eng.,. 8[1],. 39-44 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tairo OSHIMA: "Gene and Genetic manipulation Thermus themophilus. In "Thermus Species"" Plenum Press, 233 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tairo Oshima,et al.: "Module Replacement Converted Coenzyme Specificity of Isocitrate Dehydrogenase. in "Tracing Biological Evolution in Protein and Gene Structures"" Elsevier Science, 314 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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