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Elucidation of molecular evolutinary mechanisms of HIV and HCV

Research Project

Project/Area Number 07404043
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionNational Institute of Genetics

Principal Investigator

GOJOBORI Takashi  National Institute of Genetics, Center for Information Biology, Professor, 生命情報研究センター, 教授 (50162136)

Co-Investigator(Kenkyū-buntansha) IKEO Kazuho  National Insttitute of Genetics Center for Information Biology, Assistant Profes, 生命情報研究センター, 助手 (20249949)
MIZOKAMI Masashi  Nagoya City University Medical School, Second Department of Medicine, Lecturer, 医学部, 講師 (40166038)
TATENO Yoshio  National Institute of Genetics, Center for Information Biology, Professor, 生命情報研究センター, 教授 (00202424)
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥29,700,000 (Direct Cost: ¥29,700,000)
Fiscal Year 1997: ¥6,600,000 (Direct Cost: ¥6,600,000)
Fiscal Year 1996: ¥6,500,000 (Direct Cost: ¥6,500,000)
Fiscal Year 1995: ¥16,600,000 (Direct Cost: ¥16,600,000)
KeywordsHIV / hepatitis C virus / molecular evolution / hepatitis B virus / GB virus / phylogenetic tree / subtype / nucleotide substitution / 塩基置換
Research Abstract

The main purpose of this research project is to elucidate the evolutionary mechanisms of evolutionary processes of HIV (Human Immunodeficiency Virus) and HCV (Hepatitis C Virus). To accomplish this purpose, we conducted the research and obtained the following results : (1) We successfully constructed the databases for HIV and HCV spearately. In particular, the CD-ROM version of the HCV database has been distributed to all participants of the international HCV workshop at Kyoto. Moreover, the international meeting of the HCV nomenclature committee hosted by CDC,which was held at Sanata Fe in the United States in 1997, decided to adopt our HCV database as an official HCV database. (2) We successfully constructed phylogenetic trees for HIV clones isolated from single patients. It suggested that this type of analysis was very useful for elucidatinig the generating mechanisms of viral variants. (3) It also showed that the analysis of intra-body evolution of viral clones gave an insight into the effect of anti-viral drugs on the generation of viral variation. (4) We examined the infection routes such as needle stick accidents and husband-and-wife relationships from the viewpoint of molecular evolution. In particular, the frequency of infection through the husband and wife relationship was found to be very low.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (39 results)

All Other

All Publications (39 results)

  • [Publications] Suzuki, Y.: "The origin and evolution of human T-Cell lymphotrophic viru stype I and II." Virus Genes. 16. 69-84 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Okamoto Y.: "Father-to-mother・to-infant transmission of HIV-1;clonally transmitted isolate of infant mutates more rapidly than that of the mother and rapidly loses reactivity with neutralizing antibody." Microbi ol Immun 01. 41. 131-138 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suzuki, Y.: "The origin and evolution of ebola and mar burg viruses." Mol.Biol.EVOl.14. 800-806 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tanaka, H.: "Inference of molecular phylogenetic tree based on minimum model-based complexity method." proceedings of Fifth international confelence on intelligent systems for molecular biology. 319-328 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yamaguchi, Y.: "Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts." Proc.Nat 1.Acad.Sci.U.S.A.94. 1264-1269 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mizokami, M.: "Constrained evolution of hepatitis B virus with overlapping genes." J.Mol.Evol.44. 83-90 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiga, .H.: "Identification of multiple cytotoxic T-cell epitopes present HI ed byhumanle ukocyte antigen B35 molecules." AIDS. 10. 1075-l083 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K.: "Evolutionary relationship of hepatitis C,pesti-,flavi-,plantviruses,and newly discvered GB he patitis agents." FEBS Lett.378. 232-234 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K.: "Relationships bet ween serotypes and genotypes of hep at it is Bvirus:genetic classification of HBV by use of surface genes" Virus Research. 39. 25-34 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Gojobori, T.: "Genetic diversity and molecular evolution of pathogenic viruses." Biology International. 33. 30 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiina, T.: "Isolation and characterization of cDNA clones for Japanese quail(Coturnix japonica)major histocompatibility complex(MhcCoja)class I molecules." Immuno genetics. 42. 213-216 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K.: "Classification of hepatitis C virus into major types and subtypes based on molecular evolutionary analgsis." Virus.Research. 36. 201-214 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suzuki, Y., and T.Gojobori: ""The origin and evolution of human T-Cell lymphotrophic virus type I and II."" Virus Genes. 16(1). 69-84 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Okamoto Y., K.Shiosaki, Y.Eda, S.Tokiyoshi, Y.Yamaguchi, T.Gojobori, T.Hachimori, S.Yamazaki, and M.Honda: ""Father-to-mother-to-infant transmission of HIV-1 : clonally transmitted isolate of infant mutates more rapidly than that of the mother and rapidly loses reactivity with neutralizing antibody."" Microbilo Immunol. 41 : (2). 131-138 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suzuki, Y., and T.Gojobori: ""The origin and evolution of ebola and marburg viruses."" Mol.Biol.Evol.14(8). 800-806 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tanaka, H., F.Ren, T.Okayama, and T.Gojobori: ""Inference of molecular phylogenetic tree based on minimum model-based complexity method."" Proceedings of Fifth international conference on intelligent systems for molecular biology.319-328 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yamaguchi, Y., and T.Gojobori: ""Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts."" Proc.Natl.Acad.Sci.U.S.A.94. 1264-1269 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mizokami, M., E.Orito, K.Ohba, K.Ikeo, J.Y.N.Lau, and T.Gojobori: ""Constrained evolution of hepatitis B virus with overlapping genes."" J.Mol.Evol.44. 83-90 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiga, H., Y.Shioda, H.Tomiyama, Y.Takamiya, S.Oka, S.Kimura, Y.Yamaguchi, T.Gojobori, Rammensee, K.Miwa, and M.Takiguchi: ""Identificaton of multiple HIV-1 cytotoxic T-cell epitopes presented by human leukocyte antigen B35 molecules."" AIDS. 10. 1075-1083 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K., M.Mizokami, J.Y.N.Lau, E.Orito, K.Ikeo, and T.Gojobori: ""Evolutionary relationship of hepatitis C,pesti-, flavi-, plantviruses, and newly discovered GB hepatitis agents."" FEBS Lett.378. 232-234 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K., M.Mizokami, T.Ohno, K.Suzuki, E.Orito, J.Y.N.Lau, Y,Ina, K.Ikeo, and T.Gojobori: ""Relationships between serotypes and genotypes of hepatitis B virus : genetic classification of HBV by use of surface genes."" Virus Research. 39. 25-34 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Gojobori, T.: ""Genetic diversity and molecular evolution of pathogenic viruses, "" Biology International. 33. 30 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiina, T., A.Ando, T.Imanishi, H.Kawata, K.Hanzawa T.Gojobori, H.Inoko, and S.Watanabe: ""Isolation and characterization of cDNA clones for Japanese quail (Coturnix japonica) major histocompatibility complex (MhcCoja) class I molecules."" Immunogenetics. 42. 213-216 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohba, K., M.Mizokami, T.Ohno, K.Suzuki, E.Orito, Y.Ina, JYN.Lau, and T.Gojobori: ""Classification of hepatitis C virus into major types and subtypes based on molecular evolutionary analysis."" Virus Research. 36. 201-214 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yamaguchi,Y.: "Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts." Proc.Natl.Acad.Sci.U.S.A.94. 1264-1269 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Okamoto,Y.: "Father-to-mother-to-infant transmission of HIV-1:clonally transmitted isolate of infant mutates more rapidly than that of the mother and rapidly loses reactivity with neutralizing antibody." Microbiol Immunol.41. 131-138 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mizokami,M: "Constrained evolution of hepatitis B virus with overlapping genes." J.Mol.Evol.44. 83-90 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Suzuki,Y.: "The origin and evolution of ebola and marburg viruses." Mol.Biol.Evol.14. 800-806 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Tenzen,T.: "Precise switching of DNA replication timing in the GC content transition area in the human Major Histocompatibility Complex." Mol.and Celular Biology. 17. 4043-4050 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Nakamura,Y.: "Codon usage tabulated from the international DNA sequence databases." Nucl.Acids Res.25. 244-245 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ohba,K.: "Evolutionary relationship of hepatitis C,pesti-,flavi-,plantviruses,and newly discovered GB hepatitis agents." FEBS Lett.378. 232-234 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Endo,T.: "Large-scale search for genes on which positive selection may operate." Mol.Biol.Evol.13・5. 685-690 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Shiga,H.: "Identification of multiple HIV-1 cytotoxic T-cell epitopes presented by human leukocyte antigen B35 molecules." AIDS. 10. 1075-1083 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Tateno,Y.: "DNA data bank of Japan in the age of information biology." Nucl.Acids Res.25・1. 14-17 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Gojobori,T.: "Bio Japan '96'" Japan Bioindustry Association,Japan Health Sciences Foundation,Society for Techno-innovation of Agriculature,Forestry and Fisheries, 548 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Koike,T.: "Proceeding of the seventh workshop on Genome Informatics 1996,Tokyo" Universal Academy Press, 284 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ohba,K.: "Classification of hepatitis C virus into major types and subtypes based on molecular evolutionary analysis.21GC01:Virus Research" 36. 201-214 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ohba,K.: "Relationships between serotypes and genotypes of hepatitis B virus:genetic classification of HBV by use of surface genes." Virus Research. 39. 25-34 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ohba,K.: "Evolutionary relationship of hepatitis C,pesti-,flavi-,plantviruses,and newly discovered GB hepatitis agents." FEBS Letters. 378. 232-234 (1996)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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