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Studies on genetic variability of hatchery and wild populations of fishes by DNA markers

Research Project

Project/Area Number 07456090
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General fisheries
Research InstitutionKochi University

Principal Investigator

TANIGUCHI Nobuhiko  Kochi Univ.Faculty of Agriculture Prof., 農学部, 教授 (20036742)

Co-Investigator(Kenkyū-buntansha) IWASAKI Nozomu  Kochi Univ.Faculty of Agriculture Accoc.prof., 海洋生物教育研究センター, 助教授 (20193724)
SEKI Singo  Kochi Univ.Faculty of Agriculture Accoc.prof., 農学部, 助教授 (20216518)
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥7,000,000 (Direct Cost: ¥7,000,000)
Fiscal Year 1997: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 1996: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1995: ¥3,600,000 (Direct Cost: ¥3,600,000)
KeywordsMicrosatellite / Genetic divergence / Endangered species / Red sea bream / Catfish eel / Endogamy / アユ / リュウキュウアユ / 魚類 / DNA / アイソザイム / ミニサテライト / マイクロサテライト / DNAフィンガープリント / RAPD法 / DNA多型 / 人工種苗
Research Abstract

Stock enhancement programs that use a small number of breeders for the production of hatchery-reared juveniles to be released to the environment, may have negative effects on the genetic diversity of wild popurations due to a reduced genetic variability of the released stock. In this study, genetic diversity of wild and hatchery population of red sea bream (Pagrus major) was surveyed using DNA molymorphic markers to monitor genetic change in the brood stock and hatchery reared population. Five primer sets for PCR amplification were constructed for the microsatellite loci and the loci charcterized by screening polymorphism in red sea bream. The genetic variability was evaluated by average numbers of alleles per locus and mean heterozygosity. Distinct genetic changes in the hatchery populations were observed mainly in the average numbers of alleles per locus, but not in mean heterozygosity. This suggested that these genetic changes were mainly caused by bottle-neck effects and not by inb … More reeding. Brood stock and its pedigree were also traced, using five microsatellite DNA markers, to quantify the actual number of reproducing parents. Then, the effective number of contributing parents (Ne) and the inbreeding coefficient were estimated. It was found that the genetic diversity of the hatchery-reared stock in terms of the mean observed heterozygosity (Ho=0.856), was not significantly different (p>0.05) from that of the broodstock (Ho=0.841). However, significant differences (p<0.05) were found in the number of alleles per locus and in the frequencies of some major alleles between the two stocks. The pedigree of more than 73.5% of the progeny was effectively determined and at least 91 breeders (out of 250) actually reproduced. The estimated Ne was 63.7, consequently the estimated inbreeding coefficient was less than 0.78%. A way to conserve genetic variability and to prevent a loss of genetic variation in the hatchery-reared stock, were discussed and proposed based on the evidence obtained in this study. Less

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] 高木 基裕, 幹田 和彦, 関 伸吾, 谷口 順彦: "DNAフィンガープリントによる養殖マダイ5系統の遺伝変異保有量." 水産増殖. 43・4. 491-497 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 庄司 栄治郎, 高木 基裕, 谷口 順彦: "RAPD-PCR法によるタイ科魚類の遺伝的類縁関係." 水産育種. 22. 77-82 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 高木 基裕, 幹田 和彦, 谷口 順彦: "マイクロサテライトマーカーによる養殖および放流用マダイの遺伝的変異保有量の比較." 動物遺伝研究会誌. 24・2. 53-58 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 高木 基裕, 谷口 順彦: "ミニサテライトおよびマイクロサテライトDNA領域多型と魚類遺伝・育種への応用." 水産育種. 23. 1-12 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takagi, M., N.Taniguchi, D.Cook and R.W.Doyle: "Isolation and characterization of microsatellite loci from red sea bream Pagrus major and detection in closely related species." Fisheries Science. 63・2. 199-204 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Taniguchi, N., M.Takagi and S.Matsumoto: "Genetic evaluation of quantitative and qualitative traits of hatchery stocks for aquaculture in red sea bream." Bull.Natl.Res.Inst.Aquacult.Suppl.3. 35-41 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 谷口 順彦, 高木 基裕: "魚類のDNA分子遺伝学的アプローチ(第7章)" 恒星社厚生閣, 467 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] N.Taniguchi, M.Takagi and K.Mikita: "Genetics in sustainable fisheries management(Chapter X)" Blackwell Scientific Publications,Oxford(印刷中), (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takagi, M., K.Mikita, S.Seki and N.Taniguchi: "Genetic variability of DNA fingerprinting in 5 strains of red sea bream, Pagrus major." Suisanzoshoku. 43(4). 491-497 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shoji, E., M.Takagi and N.Taniguchi: "Genetic relationship of sparid fishes by RAPD-PCR." Fish Genetics and Breeding Sciences. 22. 77-82 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takagi, M., K.Mikita and N.Taniguchi: "Genetic change in the hatchery stock for releas and net-cage culture of red sea bream, (Pagrus major) using microsatellite markers." The Journal of Animal Genetics. 24(2). 53-58 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takagi, M., and N.Taniguchi: "Mini-and microsatellite DNA polymorphisms and their application to fish genetics and breeding science." Fish Genetics and Breeding Sciences. 23. 1-12 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takagi, M., N.Taniguchi, D.Cook and R.W.Dokle: "Isolation and characterization of microsatellite loci from red sea bream Pagrus major and detection in closely related species." Fisheries Science. 63(2). 199-204 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Taniguchi, N., M.Takagi and S.Matsumoto: "Genetic evaluation of quantitative and qualitative traits of hatchery stocks for aquaculture in red sea bream." Bull.Natl.Res.Inst.Aquacult. (Suppl.3). 35-41 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Taniguchi, N.and M.Takagi: 「DNA of Fishes ; approach of molecular genetics」 (Chapter7). Kouseisyakouseikaku, 117-137 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Taniguchi, N., M.Takagi and K.Mikita: 「Genetics in Sustainable Fisheries Management」 (ChapterX). Blackwell Scientific Publications, Oxford.(in press),

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Taniguchi,N., M.Takagi and S.Matsumoto: "Genetic evalution of quantitative and qualitative traits of hatchery stocks for aquculture in red sea bream" Bull.Natl.Res.Inst.Aquacult.Suppl.3. 35-41 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] R.Perez-Enriquez, M.Takagi and N.Taniguchi: "Genetic change and Pedigree tracing of a hetchery-reared stock of red sea bream(Pagrus major)used for stock enhancement,based on microsatellite DNA markers." Aquaculture. (印刷中). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] Taniguchi,N., M.Takagi and K.Mikita: "Genetics in sustainable fisheries management" Blackwell Scientific Publications,Oxford(印刷中), (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 高木基裕他: "DNAフィンガープリントによる養殖マダイ5系統の遺伝的変異保有量" 水産増殖. 43・4. 491-497 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] M.Takagi etal.: "Isolation and characterization of microsatellite loci from red sea bream Pagrus major and detection in closely related species." Fisheries Science. 63・2. (1997)

    • Related Report
      1996 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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