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Elucidation of structure of antitumor antibiotic kapurimycin A3 and reactivity toward DNA

Research Project

Project/Area Number 07458142
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

SAITO Isao  Kyoto University, Faculty of Engineering, Professor, 工学研究所, 教授 (20026082)

Co-Investigator(Kenkyū-buntansha) NAKATANI Kazuhiko  Kyoto University, Faculty of Engineering, Assistant Professor, 工学研究所, 助手 (70237303)
Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥5,900,000 (Direct Cost: ¥5,900,000)
Fiscal Year 1996: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1995: ¥4,900,000 (Direct Cost: ¥4,900,000)
Keywordskapurimycin A_3 / DNA alkylation / guanine N7 / antitumor antibiotic / epoxide / major groove / メ-ジャーグルーブ
Research Abstract

Antitumor antibiotic kapurimycin A3, having a structure closely related to pluramycin family, alkylates DNA by the attack of the epoxide subunit on the guanine N7 to result in a formation of kapurimycin-DNA adduct. In order to know the factors responsible for such highly efficient and selective guanine alkylation, we have synthesized a series of truncated kapurimycin analogs as well as their epoxy alcohol and diol derivatives. DNA-cleaving activity examined by plasmid relaxation assay indicated that the ABC ring analog efficiently alkylates DNA,while the corresponding AB ring analog showed only a very weak DNA-cleaving activity. DNA cleavage experiments using ^<32>P-5'-end-labeled DNA fragment indicated that the sequence selectivity including 5'-side selectivity for 5'-GG-sequence was indistinguishable for kapurimycin A_3 and its ABC ring analog. We concluded that the ABC ring analog has a minimal structural unit for kapurimaycin A_3 to achieve effective and sequence specific guanine alkylation.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] :齋藤烈: "Theoretical Studies of GG-Specific Photocleavage of DNA via Elactron Transfer" J. Am. Chem. Soc.118. 7063-7068 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 齋藤烈: "New Synthetio Method of 5-Formyluracil-Containing Oligonucleolids and Their Melring Bchgvior" Tetrahedron Lett.37. 9067-9070 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 齋藤烈: "Distamycin A Modulates the Sequence Specificity of DNA Alkylation by Duocarmycin A" Proc. Natl. Acad. Sci., USA. 93. 14405-14410 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 中谷和彦: "6-Endo-and 5-Exo-digonal Cyclization of o-Hydroxy Ethynyl Ketones" Tetrahedron. 52. 9427-9436 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 中谷和彦: "Design of DNA-Cleaving Agents" Bull. Chem. Soo. Jpn. 69. 3007-3019 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 中谷和彦: "Tracated Analogs of Kapurimycin A_3 and DNA Alkylation Mechanism" Nucleio Acids Res Symp Ser.35. 83-84 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Isao Saito: "TheoreticalStudies of GG-Specific Photocleavage of DNA viaElectron Transfer" J.Am.Chem.Soc.37. 7063-7068 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Isao saito: "New Synthetic Method of 5-Formyluracil-Containing Oligonucleotides" Tetrahedron Lett.37. 9067-9070 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Isao saito: "Distamycin A Modulates the Sequence Specificity of DNA Alkylation by Duocarmycin A" Proc.Natl.Acad.Sci.USA. 93. 14405-14410 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kazuhiko Nakatani: "6-Endo-and 5-Digonal Cyclization of 0-Hydroxy Ethynyl Ketones" Tetrahedron. 52. 9427-9436 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kazuhiko Nakatani: "Design of DNA-Cleaving Agents" Bull.Chem.Soc.Jpn.69. 3007-3019 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kazuhiko Nakatani: "Trucated Analogs of Kapurimycin A3 and DNA Alkylation Mechanism" Nucleic Acids Res.Symp.Ser.35. 83-84 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 齋藤,烈: "Theoretical Studies of GG-Specific Photocleavage of DNA via Electron Transfer" J.Am.Chem.Soc.118. 7063-7068 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 齋藤,烈: "New Synthetic Method of 5-Formyluracil-Containing Oligonucleotids and Their Melring Behavior" Tetrahedron Lett.37. 9067-9070 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 齋藤,烈: "Distamycin A Modulates the Sequence Specificity of DNA Alkylation by Duocarmycin A" Proc.Natl.Acad.Sci.USA. 93. 14405-14410 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 中谷,和彦: "6-Endo-and 5-Exo-digonal Cyclization of o-Hydroxy Ethynyl Ketones" Tetrahedron. 52. 9427-9436 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 中谷,和彦: "Design of DNA-Cleaving Agents" Bull.Chem.Soc.Jpn. 69. 3007-3019 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 中谷,和彦: "Trucated Analogs of Kapurimycina A_3 and DNA Alkylation Mechanism" Nucleio Acids Res.Symp Ser.35. 83-84 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 斉藤 烈: "α-Diazo Ketons as Photochemical DNA-Cleavers: A Mimic for Radical Generating System of Neocarzinostatin Chromophore" J. Am. Chem. Soc.117. 10635-10635 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 斉藤 烈: "Photoactivatable DNA-Cleaving Amino Acids: Highly Sequence Selective DNA Photocleavage by Novel L-Lysine Derivatives" J. Am. Chem. Soc.117. 5590-5591 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 斉藤 烈: "Photogeneration of Highly Electrophilic Benzoylketene from Dibenzoyldiazomethane in Aqueous Solbents' Reaction with Amino Acids and DNA Cleavage" T. L.36. 5363-5366 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 斉藤 烈: "Sequence-Specific DNA Binding by Covalently Constrained Peptide Dimers of the Basic Leucine Zipper Protein GCN4" Bioorganic & Medical Chemistry. 3. 777-784 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 斉藤 烈: "NMR Characterzation of Guanine DNA Site Alkylated by Kapurimycin A3, an Antitumour Antibiotic from Streptomyces sp." Phytochemistry. 40. 1373-1374 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 斉藤 烈: "Oligonucleotides Containing a Radical Trap" J. Am. Chem. Soc.116. 10326-10327 (1994)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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