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Structural Studies on Molecular Recognition of Nucleic Acid Bases

Research Project

Project/Area Number 07458171
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

HAKOSHIMA Toshio  Nara Institute of Science and Technology Department of Molecular Biology Professor, バイオサイエンス研究科, 教授 (00164773)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥7,400,000 (Direct Cost: ¥7,400,000)
Fiscal Year 1996: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1995: ¥4,800,000 (Direct Cost: ¥4,800,000)
Keywordstranscription factor / basic transcription factor / protein / DNA / molecular complex / X-ray / structural biology / 大腸菌 / σ因子 / ピロモータ / 認識
Research Abstract

Purification, characterization and crystallization of sigma factors, sigma28, sigma38, and sigma70, were performed. Measurements of fluorescent polarization and surface plasmon resonance showed that sigma28 and sigma38 could bind to promoter DNAs, especially strongly to the-10 region of the promoters. Crystals of sigma38 were obtained by a vapor-diffusion method. Crystal structure of a yeast transcription factor PHO4 complexed with DNA was solved by the conventional MIR method. The crystal structure revealed how PHO4 recognizes the DNA sequence at an atomic resolution. Crystals of a murine transcription factor IRF-2 complexed with DNA and a yeast transcription factor papl bound to DNA also were obtained. Structure determination of these crystals are underway. Crystal structure of a HPt (histidine-containing phosphotransfer) domain of E.coli sensor protein ArcB was solved. The crystal structure indicated that the domain exists both in prokaryote and eukaryote.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (34 results)

All Other

All Publications (34 results)

  • [Publications] M. Kato: "Crystallization and Preliminars X-ray analy sis of a histio" Acta Crgstallogr.D52 (6). 1214-1215 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H. Ohishi: "Interaction between the left-handed Z-DNA and" FEBS lett.391. 153-156 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H. Ohishi: "Interaction between the left-handed Z-DNA and polyamine-3" FEBS Lett.398. 291-296 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] A. Toumoto: "Preliminary X-ray studies on a new crystal form of" Acta Crgstallogr.D53 (1). 103-104 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M. Kato: "Insight into multistep phosphorelay from the crystal" Cell. 88 (5). 717-723 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] T. Kishi: "Crystallization and preliminary X-ray analysis of aserine" J. Struct. Biol.(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] T. Shimizu: "Crystal structure of PH04 bHLH domain-DNA complex" EMBOJ.16. ((in press))

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H. Yaku: "Interaction between the Cher response regulator" FEBS Lett. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] S. Kuge: "Use of a fusion protein to obtain well-ordered" Protein Science. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M. Kato: "Crystallization and preliminary x-ray analysis of the" Acta Crgstallogr.(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "RNase T1とグアニンヌクレオチドの相互作用" 蛋白質・核酸・酵素. 増巻号. 1627-1634 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "蛋白質/DNA複合体の構造研究" SR科学技術情報. 6 (1). 3-8 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "転写因子とその構造" 臨床医. 23 (5) (印刷中). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "転写因子における核酸-蛋白質相互作用" 日本結晶学会誌. (印刷中). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "薬学の進歩13" 薬学研究奨励財団, 143 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 箱嶋敏雄: "構造生物学とその解析法" 日本生物物理学会(印刷中), (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M.Kato, K.Ishige, T.Mizuno, T.Shimizu, & T.Hakoshima: "Crystallization and Preliminary X-ray Analysis of a Histidine Kinase Domain of the Anaerobic Sensor Protein ArcB from Escherichia coli." Acta Crystallogr.D52 (6). 1214-1215 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H.Ohishi, I.Nakanishi, K.Inubushi, G.Van del Marel, J.Van Boom, A.Rich, A.H.J.Wang, T.Hakoshima & K.Tomita: "Interaction between the left-handed Z-DNA and polyamine-2 : The crystal structure of the d(CG)_3 and spermidine complex." FEBS Lett.391. 153-156 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H.Ohishi, I.Nakanishi, K.Inubushi, G.Van del Marel, J.Van Boom, A.Rich, A.H.J.Wang, T.Hakoshima & K.Tomita.: "Interaction between the left-handed Z-DNA and polyamine-3 : The crystal structure of the d(CG)_3 and thermospermine complex." FEBS Lett.398. 291-296 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] A.Toumoto, T.Shimizu, M.Shimizu, Y.Kyogoku, N.Ogawa, Y.Oshima & T.Hakoshima.: "Preliminary X-ray studies on a new crystal form of PHO4-DNA complex." Acta Crystallogr.D53 (1). 103-104 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M.Kato, T.Mizuno, T.Shimizu, & T.Hakoshima.: "Insights into multi-step phosphorelay from the crystal structure of the C-terminal HPt domain of ArcB." Cell. 88 (5). 717-723 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] T.Kishi, M.Kato, T.Shimizu, K.Kato, K.Matsumoto, S.Yoshida, S.Shiosaka & T.Hakoshima.: "Crystallization and preliminary x-ray analysis of a serine protease expressed in the limbic system of brain, neuropsin." J.Struct.Biol.(in the press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] T.Shimizu, A.Toumoto, M.Shimizu, Y.Kyogoku, N.Ogawa, Y.Oshima & T.Hakoshima.: "Crystal structure of PHO4 bHLH domain-DNA complex : Flanking base recognition." EMBO J.16 (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] H.Yaku, M.Kato, & T.Hakoshima, T.Mizuno.: "Interaction between the Che Y response regulator and the histidine-containing phosphotransfer (HPt) domain of the ArcB sensor Kinase in Escherichia coli." FEBS Lett.(in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] S.Kuge, Y.Fujii, T.Simizu, F.Hirose, A.Matsukage & T.Hakoshima: "Use of a fusion protein to obtain well-ordered crystals suitable for X-ray analysis : crystallization of a GST fusion protein containing the DNA-binding domain of DNA replication related element-binding factor, DREF." Prot.Sci.6 (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M.Kato, T.Mizuno & T.Hakoshima: "Crystallization and Preliminary X-ray Analysis of the chemotaxis response regulator CheY complexed with the HPt Domain of the Anaerobic Sensor Protein ArcB." Acta Crystallogr.D53 (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] A.Toumoto: "Preliminary X-ray studies on a new crystal form of PHO4-DNA complex." Acta Crystallogr.D53・1. 103-104 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] T.Shimizu: "Crystal structure of PHO4-DNA complex." EMBO J.16・(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "蛋白質/DNA複合体の構造研究" SR科学技術情報. 6・1. 3-8 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "蛋白質による核酸塩基識別における特異的相互作用と非特異位的相互作用" 研究成果報告集「薬学の進歩13」. 13. 73-84 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "転写因子とその構造" 臨床医. 23・5(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "転写因子におけるDNA-蛋白質相互作用" 日本結晶学会誌. (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "シリーズ・ニューバイオフィジックス3「構造生物学とその解析法」" 核酸及び核酸・蛋白質複合体(印刷中), (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "核酸化学の新展開" 共立出版・蛋白質核酸酵素, 1686 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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