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Experimental simulation on molecular evolution of RNA enzymes (ribozymes)

Research Project

Project/Area Number 07458179
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

INOUE Tan  Kyoto University, Chemistry, Professor, 大学院理学研究科, 教授 (40114855)

Co-Investigator(Kenkyū-buntansha) SHIRAISHI Hideaki  Kyoto University, Chemistry, Lecturer, 大学院理学研究所, 講師 (90202118)
Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥7,800,000 (Direct Cost: ¥7,800,000)
Fiscal Year 1996: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 1995: ¥6,600,000 (Direct Cost: ¥6,600,000)
KeywordsRNA / ribozyme / enzyme / Tetrahymena / in vitro selection / 分子進化
Research Abstract

We have been investigating the structure-function relationship of the Tetrahymena ribozyme that is the most extensively studied group I self-splicing intron. During the course of this project, two new stem-loop structures (P2.1 and P9.1) in the RNA are identified as the peripherals that associate together via long-range Watson-Crick basepairings. It also became clear that one of them functions as a trans-activator for the intron lacking this region. The activation presumably depends on an unusual A-C baseparing and the nucleotides located nearby.
A new technique by that active RNAs can be selected among the modified ones with nemerous numbers of mutations was developed. The technique is based on the combined use of in vitro selection and color colony assay. By employig this technique, we identified adenosines that are located close to each other in an unusual loop region are resposible for the activation of the intron RNA.A project that employs error-prone PCR technique is also now in progress.
On the basis of these findings, we are now attempting to build new artificial domains that facilitates tthe splicing reaction by the catalytic RNA.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (13 results)

All Other

All Publications (13 results)

  • [Publications] 井上善也,白石英秋,井上丹: "Characterization of the newly constructed domaoins that replace P5abc within the Tetrahymena ribozyme" FEBS Letters. 394. 5-8 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 井上善也,内藤善一,白石英秋,井上丹: "Structure, function and mulecular evolution of Group I intron ribozyme" Nucleic Acids Symposium Series. 35. 195-196 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 渡辺悟、河合剛太、武藤裕、渡辺公網、井上丹、横山茂之: "An RNA fragment consisting of the P7 and P9.0 stems and the 3'terminal guanosine of the Tetrahymena group I intron" Nucleic Acids Research. 24(7). 1337-1344 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 井上善也,太田英男,白石英明,井上丹: "Long-range interaction between P2.1 and P9.1 peripheral domains in the Tetrahymena ribozyme" Nucleic Acids Research. 印刷中. (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Ikawa, H.Shiraishi and T.Inoue: "Characterization of the newly constructed domaoins that replace P5abc within the Tetrahymena ribozyme" FEBS Letters. vol.394. 5-8 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Ikawa, Y.Naito, H.Shiraishi and T.Inoue: "Structure, function and molecular evolution of Group I intron ribozyme" Nucleic Acids Symposium Series. vol.35. 195-196 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] S.Watanabe, G.Kawai, H.Mutou, K.Watanabe, T.Inoue and S.Yokoyama: "An RNA fragment consisting of the P7and P9.0stems and the 3'terminal guanosine of the Tetrahymena group I intron" Nucleic Acids Research. vol.24. 1337-1344 (1966)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Ikawa, H.Ohta, H.Shiraishi and T.Inoue: "Long-range interaction between P2.1 and P9.1 peripheral domains in the Tetrahymena ribozyme" Nucleic Acids Research. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 井川善也,白石英秋,井上丹: "Characterization of the newly constructed domaoins that replace P5abc within the Tetrahymena ribozyme" FEBS Letters. 394. 5-8 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] 井川善也,内藤義一,白石英秋,井上丹: "Structure,function and molecular evolution of Group I intron ribozyme" Nucleic Acids Symposium Series. 35. 195-196 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 渡辺悟,河合剛太,武藤裕,渡辺公綱,井上丹,横山茂之: "An RNA fragment consisting of the P7 and P9.0 stems and the 3'terminal guanosine of the Tetrahymena group I intron." Nucleic Acids Reserach. 24・7. 1337-1344 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 井川善也,太田英男,白石英秋,井上丹: "Long-range interaction between P2.1 and P9.1 peripheral domains in the Tetrahymena ribozyme" Nucleic Acids Reserach. (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Y. Ikawa: "The Tetrahymena ribozyme tolerates diverse activator domcics that replam psabc" “Tracing Biological Evolution in Protein and Gene Structures". 115-123 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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