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Development of a database of gene trees and species trees

Research Project

Project/Area Number 07554046
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 系統・分類
Research InstitutionNational Institute of Genetics

Principal Investigator

SAITOU Naruya  National Institute of Genetics, Department of Population Genetics, Associate Professor, 集団遺伝研究系, 助教授 (30192587)

Co-Investigator(Kenkyū-buntansha) ITOU Motomi  Chiba University, Department of Biology, Associate Professor, 理学部, 助教授 (00193524)
TAMURA Kouichirou  Tokyo Metropolitan University, Department of Biology, Reseach Associate, 理学部, 助手 (00254144)
IMANISHI Tadashi  National Institute of Genetics, Center for Information Biology, Research Associa, 生命情報センター, 助手 (80270461)
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥18,200,000)
Fiscal Year 1997: ¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 1996: ¥5,800,000 (Direct Cost: ¥5,800,000)
Fiscal Year 1995: ¥8,900,000 (Direct Cost: ¥8,900,000)
KeywordsMolecular Evolution / Molecular Tree / Taxonomy / Tree View / Dendro Maker
Research Abstract

We created a database of phylogenetic trees, and named it "Jungle". Academic journals in which molecular phylogenetic trees frequently appear were, searched, and images of figures that present phylogenetic trees are Database Jungle were obatained from a scanner, then those were annotated. Journals searched were Molecular Biology and Evolution, Journal of Molecular Evolution, Molecular Phylogenetics and Evolution, Nature, Science, Proceedings of National Academy of Sciences, Genetics, Genes and Genetic Systems (formerly Japanese Journal of Genetics), Zoological Science, Evolution, Systematic Botany, and American Journal of Botany. This database is available via WWW (World Wide Wed) and its URL is http : //smiler.lab.nig.ac.jp/jungle/jungle.html. We also plan to distribute its CDROM to interested researchers.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (64 results)

All Other

All Publications (64 results)

  • [Publications] Oota H.: "A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences." American Journal of Physical Anthropology. 98. 133-145 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kashiwase K.: "A new HLA-A9 subtype lacking the .Bw4 epitope: Ancestral or revertant allele?" Human Immunology. 42. 221-226 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiina T.: "Isolation and characterization of cDNA clones for Japanese quail(Coturnix japonica) major histocompatibility complex(MhcCoja)class Imolecules." Immunogenetics. 42. 13-216 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ishida N.: "Mitochondrial DNA sequences of various species of the genus Equus with a special reference to the phylogenetic relationship between Przewalskii's wild horse and domestic horse" Journal of Molecular Evolution. 41. 180-188 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ogasawara K.: "Extensive polymorphism of ABO blood group gene:1.Three major lineages of the alleles for the common ABO phenotypes" Human Genetics. 97. 777-783 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ogasawara K.: "Molecular genetic analysis of the variant phenotypes of ABO blood group system" Blood. 88・7. 2732-2737 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Sumiyama K.: "Evolution of class III POU genes:amplification of characteristic amino acid residues by G+C pressure mammals" Journal of Molecular Evolution. 43.3. 170-178 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohtsuka H.: "The presence/absence polymorphism and evolution of p53 pseudogene within the genus Mus" Molecular Phylogenetics and Evolution. 5・3. 548-556 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kitano T.: "The phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers" Genes and Genetic Systems. 72・1. 25-34 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Saitou N.: "Evolution of primate ABO blood group genes and their homologous genes" Molecular Biology and Evolution. 14・4. 399-411 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Omoto K.: "Genetic origins of the Japanese:A partial support for the "dual structure hypothesis"." American Journal of Physical Anthropology. l02・4. 437-446 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 斎藤 成也: "遺伝子の進化とは〜ABO式血液型を中心に〜" BIO Clinica. 12・11. 830-834 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tateno Y.: "Evolutionary motif and its biological and structural significance" Journal Molecular Evolution. 44. S38-S43 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mizuki N.: "Major histocompatibility complex class II alleles in Kazak and Han populations in the Silk Route of northwestern China." Tissue Antigens. 50. 527-534 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Endo T.: "Evolutionary significance of intra-genome duplications on human chromosomes." Gene. 205. 19-27 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ito, M.: "Allozyme Diversity of Pittosporum(Pittosporaceae) on the Bonin (Ogasawara)Islands" J. Plant Res.110. 455-462 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kita, Y.: "Phylogenetic position of Taiwanise aconite,Aconitum bartletii(Ranunculaceae)" J.phytogeogr.Taxon.45. 75-82 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Saitou N.: "Doolittle R.(ed.),Methods in Enzymology.Vol.266" Academic Press,Inc.,Orlando, 736 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Saitou N.: "Molecular Biology and Human Diversity" Cambridge University Press,Cambridge, 305 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 斎藤 成也: "「遺伝子は35億年の夢を見る-バクテリアから人間の進化まで-」" 大和書房,東京, 229 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 斎藤 成也: "環太平洋人類集団の過去と未来.福田一郎・劉剛編著,「文明と遺伝」" 勉誠社,東京, 310 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 今西 規: "ネオ生物学シリーズ9,ヒト,遺伝子が語る人のすがた" 共立出版,東京, 154 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 今西 規: "人類学講座別巻2,人類学用語" 雄山閣出版,東京, 305 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Oota H.: "A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences" American Journal of Physical Anthropology. 98. 133-145 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kashiwase K.: "A new HLA-A9 subtype lacking the Bw4 epitope : Ancestral or revertant allele?" Human Immunology. 42. 221-226 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Shiina T.: "Isolation and characterization of cDNA clones for Japanese quail (Coturnix japonica) major histocompatibility complex (MhcCoja) class I molecules" Immunogenetics. 42. 13-216 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ishida N.: "Mitochondrial DNA sequences of various species of the genus Equus with a special reference to the phylogenetic relationship between Przewalskii's wild horse and domestic horse" Journal of Molecular Evolution. 41. 180-188 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ogasawara K.: "Extensive polymorphism of ABO blood group gene : 1. Three major lineages of the alleles for the common ABO phenotypes" Human Genetics. 97. 777-783 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ogasawara K.: "Molecular genetic analysis of the variant phenotypes of ABO blood group system" Blood. 88・7. 2732-2737 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Sumiyama K.: "Evolution of class III POU genes : amplification of characteristic amino acid residues by G+C pressure in mammals" Journal of Molecular Evolution. 43・3. 170-178 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohtuska H.: "The presence/absence polymorphism and evolution of p53 pseudogene within the genus Mus" Molecular Phylogenetics and Evolution. 5・3. 548-556 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kitano T.: "The phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers" Genes and Genetic Systems. 72・1. 25-34 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Saitou N.: "Evolution of primate ABO blood group genes and their homologous genes" Molecular Biology and Evolution. 14・4. 399-411 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Omoto K.: "Genetic origins of the Japanese : A partial support for the "dual structure hypothesis"." American Journal of Physical Anthropology. 102・4. 437-446 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tateno Y.: "Evolutionary matif and its biological and structural significance" Journal Molecular Evolution. 44. S38-S43 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mizuki N.: "Major histocompatibility complex class II alleles in Kazak and Han populations in the Silk Route of northwestern China." Tissue Antigens. 50. 527-534 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Endo T.: "Evolutionary significance of intra-genome duplications on human chromosomes." Gene.205. 19-27 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ito, M.: "Allozyme Diversity of Pittosporum (Pittosporaceae) on the Bonin (Ogasawara) Islands" J.Plant Res.110. 455-462 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Kita, Y.: "Phylogenetic position of Taiwanise aconite, Aconitum bartletii (Ranunculaceae)" J.Phytogeogr.Taxon.45. 75-82 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Saitou N.: "Evolution of primate ABO blood group genes and their homologous genes" Molecular Biology and Evolution. 14・4. 399-411 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Kitano T.: "The phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers." Genes and Genetic Systems. 72・1. 25-34 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Omoto K.: "Genetic origins of the Japanese:A partial support for the “dual structure hypothesis"." American Journal of Physical Anthropology. 102・4. 437-446 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Tateno Y.: "Evolutionary motif and its biological and structural significance" Journal Molecular Evolution. 44. S38-S43 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mizuki N: "Major histocompatibility complex class II alleles in Kazak and Han populations i the Silk Route of northwestern China." Tissue Antigens. 50. 527-534 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Endo T.: "Evolution ary significance of intra-genome duplications on human chromosomes" Gene. 205. 19-27 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ito M: "Allozyme Diversity of Pittosporum(Pittosporaceae) on the Bonin (Ogasawara) Islands" J.Plant Res.110. 455-462 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Kita,Y.: "Phylogenetic position of Taiwanise aconite,Aconitum bartletii(Ranunculaceae)" J.Phytogeogr. Taxon.45. 75-82 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 齋藤成也: "『遺伝子は35億年の夢を見る-バクテリアから人間の進化まで-』" 山和書房,東京, 229 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 齋藤成也: "環太平洋人類集団の過去と未来.福田一郎・劉剛編著,『文明と遺伝』" 勉誠社,東京, 310 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Saitou N.and Yamamoto F.: "Evolution of primate ABO blood group genes and their homologous genes" Molecular Biology and Evolution. 14・4(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ogasawara K.et al.: "Extensive polymorphism of ABO blood group gene : 1. Three major lineages of the alleles for the common ABO phenotypes" Human Genetics. 97. 777-783 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ogasawara K.et al.: "Molecular genetic analysis of the variant phenotypes of ABO blood group system" Blood. 88・7. 2732-2737 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Sumiyama K.et al.: "Evolution of class III POU genes : amplification of characteristic amino acid residues by G+C pressure in mammals" Journal of Molecular Evolution. 43・3. 170-178 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ohtsuka H.et al.: "The presence/absence polymorphism and evolution of p53 pseudogene within the genus Mus" Molecular Phylogenetics and Evolution. 5・3. 548-556 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kitano T.et al.: "The phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers" Genes and Genetic Systems. 72(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Saitou N.: "Doolittle R.(ed.),Methods in Enzymology,Vol.266" Academic Press,Inc.,Orlando, 736 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Saitou N.: "Molecular Biology and Human Diversity" Cambridge University Press,Cambridge, 305 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ishida N.et al.: "Mitochondrial DNA sequences of various species of the genus Equus with a special reference to the phylogenetic relationship between Przewalskii's wild horse and domestic horse" Journal of Molecular Evolution. 41. 180-188 (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Oota H.et al.: "A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences." American Journal of Physical Anthropology. 98. 133-145 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ohtsuka H.et al.: "The presence/absence polymorphism and evolution of p53 pseudogene within the genus Mus." Molecular Phylogenetics and Evolution. 5(印刷中). (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kashiwase K.et al.: "A new HLA-A9 subtype lacking the Bw4 epitope:Ancestral or revertant allele?" Human Immunology. 42. 221-226 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Shiina T.et al.: "Isolation and characterization of cDNA clones for Japanese quail(Coturnix japonica)major histocompatibility complex(MhcCoja)class I molecules." Immunogenetics. 42. 13-216 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] OOta S.et al.: "ICLP'95 Workshop on Parallel Logic Programming Chikawama T.et al.eds.28HD01:1995" Department of Electronic Engineering,University of Tokyo, 72

    • Related Report
      1995 Annual Research Report
  • [Publications] Saitou N.: "Doolittle R.ed.,Methods in Enzymology,Vol.226," Academic Press,Inc.,Orlando(印刷中), (1996)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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