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Identification system of bacteria based on ribosomal small subunit RNA sequences

Research Project

Project/Area Number 07556127
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section試験
Research Field 生物資源科学
Research InstitutionThe University of Tokyo

Principal Investigator

OYAIZU Hiroshi  Graduate School of Agriculture and Agricultural Life Sciences, The University of Tokyo, 大学院・農学生命科学研究科, 助教授 (70177301)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1996: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsBacteria / Rapid identification / 16S rRNA / Gene sequences / DNA data base / データベース
Research Abstract

This study aimed to make a data base of 16S rRNA sequences for bacterial identification and to develop a identification system of bacteria based on 16S rRNA sequences. Firstly, we made a data base of 16S rRNA sequences which includes information about genus name, spices name, strain number, taxonomic status, taxonomic group, accession number, and entry name. The data base covers most of data for bacterial 16S rRNAs of which sequences were determined more than 1000 nucleotides. We determined 16S rRNA sequences for taxonomically important species. The sepcies include 80 species of the genus Pseudomonas, 20 species of the enteric bacteria, and 16 species of Lactobacillus and Bifidobacterium. We also tried to develop a rapid method for identification of bacteria. Then, we developed a method using a capillary PCR and a capillary sequencer, by which a bacteria is identified within 8 hours.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (5 results)

All Other

All Publications (5 results)

  • [Publications] Anzai, Y., Kudo, Y., and Oyaizu, H.,: "Phylogeny of genera Chryseomonas,Flavimonas, and Pseudomonas supports synonymy of these three genera" Int.J.Syst.Bacteriol.vol.47(印刷中). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 小柳津 広志: "細菌の新しい系統分類と同定方法 2.16S ribosomalRNA配列を用いた種の同定" 日本細菌学雑誌. 49. 812-821 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Anzai, Y., Kudo, Y., and Oyaizu, H.: "Phylogeny of genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these genera" Int.J.Syst.Bacteriol. Vol.47 (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Anzai,Y.Kudo,Y.,and Oyaizu,H.: "Phylogeny of genera Chryseomonas,Flavimonas,and Pseudomonas supports synonymy of these three genera" Int.J.Syst.Bacteriol.vol.47(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 小柳津広志: "細菌の新しい系統分類と同定方法2.16SribosomalRNA配列を用いた種の同定" 日本細菌学雑誌. 49. 812-821 (1995)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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