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Development of an automated machine for HLA DNA typing

Research Project

Project/Area Number 07557179
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section試験
Research Field Laboratory medicine
Research InstitutionTokai University School of Medicine

Principal Investigator

INOKO Hidetoshi  Tokai University School of Medicine,, 医学部, 教授 (10101932)

Co-Investigator(Kenkyū-buntansha) URYU Noboru  Nichirei Genetic Research Laboratory, Researcher, 遺伝子ラボ, 研究員
ANDO Asako  Tokai University School of Medicine, Lecturer, 医学部, 講師 (40101935)
TSUJI Kimiyoshi  Tokai University School of Medicine, Professor, 医学部, 教授 (30055834)
Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥7,800,000 (Direct Cost: ¥7,800,000)
Fiscal Year 1996: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 1995: ¥4,100,000 (Direct Cost: ¥4,100,000)
KeywordsHLA / DNA typing / PCR-RFLP method / fluorescently labeling / dye-amidide / automated DNA sequencer / polymorphism / DQA1 gene / PCR-RFLP / 自動化 / 蛍光標識プライマー / 制限酵素 / GENESCAN / ジェノタイパ-
Research Abstract

We have previously developed the PCR-RFLP method which is sensitive and reliable in HLA class II genotyping. In this study, to develop an automated typing machine, we analyzed for fluorescent labeling of primers and optimized the condition for scanning of gel patterns of PCR products using an automated DNA sequencer. Dye-amidide was more reliable and stable fluorescent than aminolink-2 for labeling of the 5'-end of DQA1 and DQB1 primers. The PCR-RFLP method was performed using DQA1 primers that was fluorescently labeled with dye-amidide, and informative restriction enzymes. Using Genescan^<TM>672 and Genotyper^<TM>software kits, all DQA1 genotypes of four HLA homozygous typing cells (HTC) and fourteen heterologous healthy individuals were easily defined from the band patterns and automatical fragment size assignment. These typing results were completely identical to those by the conventional PCR-RFLP method. Each fragment size can be determined precisely even if the quantity of PCR products is only 1 ng. Therefore, this new PCR-RFLP method is highly sensitive and reliable in HLA class II genotyping. Discrimination between specific and non-specific fragments in the PCR products was relatively easy for the precision of size and quantitative amount assignment. Electrophoretic data can be also displayd as a multi color digitized gel pattern using several dyes labeling. Therefore, this system is highly efficient for application to a lot of samples.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] Naruse T.et al.: "Cloned PLT cells recognize the fourth,fifth and sixth hypervariable regions at amio acid positions 65・87 of DPB1 molecule." Hum.Immunol. 42. 123-130 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 成瀬妙子、猪子英俊: "免疫学的検査 I.HLA HLADNAタイピング" 日本臨床. 53. 676-683 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Morive T.et al.: "Identifioation of a DRB1′0405 variant(DRB1′04052)using the PCR-RFLP method." Tissue Antigens. 48. 450-453 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Naruse T.K.et al.: "Analysis of allelie variation of the HLA-DMB gene in Japanese by PCR-RFLP as well as direct sequencingand identification of a new DMB allele.,DMB′0105." Tissue Antigens. 48. 530-537 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ando H.et al.: "HLA-C genotyping in the Japanese population by the PCR-SSP method." Tissue Antigens. 48. 55-58 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M.et al.: "Analysis of HLA-DM polymorphisms in sarcoidosis." Hum.Immunol. 49. 144-146 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 安藤麻子、猪子英俊: "Bio Science用語ライブラリー 免疫" 羊土社, 62-64 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 高田 肇、猪子英俊: "ネオ生物学シリーズ第9巻 ゲノムからみた新しい生物学-「ヒト」遺伝子が語るヒトのすがた" 共立出版, 83-100 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Naruse T,et al.: "Cloned PLT cells recognize the fourth, fifth and sixth hypervariable regions at amio acid positions 65-87 of DPB1 molecule." Hum.Immunol. 42. 123-130 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Horiki T,et al.: "Combination of HLA-DPB1 and HLA-DQB1 alleles determine susceptibility to early onset myasthenia gravis in Japan." Autoimmunity. 19. 49-54 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M,et al: "Clinical features of sarcoidosis in relation to HLA distribution and HLA-DRB3 genotyping by PCR-RFLP." British J.of Opthalmology. 79. 322-325 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M,et al.: "Molecular analysis of HLA-DNA genotyping and correlation with clinical features in sarcoidosis." Sarcoidosis. 12. 163 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M,et al.: "Allelic variation in the TAP2 and LMP2 genes in Behcet's disease." Tssue Antigens. 47. 249-252 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Shindo Y,et al.: "A significant association of HLA-DPB1^*0501 with Vogt-Koyanagi-harada's disease results from a linkage disequilibrium with the primary associated allele, HLA-DRB1^*0405." Tissue Antigens. 47. 344-345 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Moribe T,et al.: "Identification of a DRB1^*0405 variant (DRB1^*04052) using the PCR-RFLP method." Tissue Antigens. 48. 450-453 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Naruse TK,et al.: "Analysis of allelic variation of the HLA-DMB gene in Japanese by PCR-RFLP as well as direct sequencing and identification of a new DMB allele, DMB^*0105." Tissue Antigens. 48. 530-537 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ando H,et al.: "HLA-C genotyping in the Japanese population by the PCR-SSP method." Tissue Antigens. 48. 55-58 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M,et al.: "Analysis of HLA-DM polymorphisms in sarcoidosis." Hum.Immunol. 49. 144-146 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ohyama H,et al.: "HLA class II Genotypes associated with early-onset periodonitis : DQB1 molecule primarily confers susceptobilitu to the dissease." J.Periodontol. 67. 888-894 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M,et al.: "LMP7 polymorphisms in Japanese patients with sarcoidosis and Behcet's disease." Hum.Immunol. 51. 103-105 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ishihara M.et al.: "Genetic polymorphisms of the MHC-encoded antigen processing gene (TAP,LMP) in sarcoidosis." Hum.Immunol.45. 105-110 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Shindo Y.et al.: "A significant association of HLA-DPB1“0501 with Vogt Koyanagi-Harada's disease results from a linkage disequilibrium with the primary associated allele,HLA DRE1"0405." Tissue Antigens. 47. 344-345 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Moribe T.et al.: "Identification of a DRB1“0405 variant (DRB1“04052) using the PCR-RFLP method." Tissue Antigens. 48. 450-453 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Naruse T.K.et al.: "Analysis of allelic variation of the HLA-DMB gene in Japanese by PCR-RFLP as well as direct sequencing and identification of a new DMB allete.,DMB“0105." Tissue Antigens. 48. 530-537 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ando H.et al.: "HLA-C genotyping in the Japanese population by the PCR-SSP method." Tissue Antigens. 48. 55-58 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ishihara M.et al.: "Analysis of HLA-DM polymorphisms in sarcoidosis." Hum.Immunol.49. 144-146 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 清沢研道、他: "Schering Plough Liver Forum (Tokyo)自己免疫性肝炎の背景因子HLAの面よりの解析" Life Science Publishing, 19-24. (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 高田肇、猪子英俊: "ネオ生物学シリーズ第9巻 ゲノムからみた新しい生物像-「ヒト」遺伝子が語るヒトのすがた" 共立出版, 83-100. (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Naruse K T, et al.: "Cloned PLT cells recognize the fourth, fifth and sixth hypervariable regions at amio acid positions 65-87 of DPB1 molecule." Human Immunology. 42. 123-130 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ishihara M, et al.: "Clinical features of sarcolidosis in relation to HLA distribution and HLA-DRB3 genotyping by PCR-RFLP." British Journal of Opthalmology. 79. 322-325 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Geng L, et al.: "Determination of HLA class II alleles by genotyping in a Manchu population in the northen part of China and its relationship with Han and Japanese population." Tissue Antigens. 46. 111-116 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Horiki T, et al.: "Combinations of HLA-DPB1 and HLA-DQB1 alleles determine susceptibility to early-onset myasthenia gravis in Japan." Autoimmunity. 19. 49-54 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 成瀬妙子、猪子英俊: "HLAのDNAタイピング:表記法と臨床応用." 臨床免疫. 27. 242-248 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 兼重俊彦他: "最新PCR-RFLP情報:1995年版Nomenclature for factors of the HLA systemを対象としたPCR-RFLP法によるDRB1, DPB1タイピング." MHC. 2. 76-84 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 成瀬妙子、猪子英俊: "日本臨床 広範囲血液免疫学的検査 第4版 下巻 HLA DNAタイピング." 日本臨床社, 676-683 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Naruse TK, et al.: "The PCR-RFLP method for HLA class II genotyping. Advances in HLA typing, Proceedings of the 11th Japan HLA Workshop (eds Sonoda S, Yashiki S, Fujinobu T) (MHC & IRS supplement to Volume 1)," 日本医学館, 65-72 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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