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Development of X-ray intensity data-collection system for macromolecular crystals

Research Project

Project/Area Number 07559010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 広領域
Research InstitutionNara Institute of Science and Technology

Principal Investigator

HAKOSHIMA Toshio  Nara Institute of Science and Technology Department of Molecular Biology, Professor, バイオサイエンス研究科, 教授 (00164773)

Co-Investigator(Kenkyū-buntansha) HIGASHI Tsuneyuki  RIGAKU Co.Ltd.Department of Research and Development, Executive Director Researc, 研究開発部, 部長研究員
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥10,800,000 (Direct Cost: ¥10,800,000)
Fiscal Year 1997: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1996: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1995: ¥6,400,000 (Direct Cost: ¥6,400,000)
Keywordsimaging palate / X-ray detector / X-ray optics / protein crystallography / molecular / molecular complex / molecular recognition / structural biology / 高輝度 / 結晶 / X線 / データ収集法 / X線発生装置 / 回転対陰極 / 巨大複合体 / X線結晶学 / 生物物理学
Research Abstract

An instrument system for X-ray intensity data collection from bio-macromolecular crystals in a laboratory was developed. The system consists of a new X-ray detector (RAXIS-IV) and an improved fine focused (0.1 mm x 1.0 mm) X-ray generator (FR-C). Using two large (300 mm x 300 mm) imaging plates, the detector was designed to yield a short read-out time with high sensitivity. The oil and vacuum sealing of the X-ray generator was improved to yield long-lasting seals. The X-ray beam was focused with Supper's double-mirror. The system was used for data collections of several protein-DNA complex, protein-GTP complex and protein crystals and structure determinations of these crystals were performed using the intensity data obtained. These are the budding yeast transcription factor PHO4 complexed with DNA,the mouse transcription factor IRF-2 complexed with DNA,the fission yeast transcription factor Pap1 complexed with DNA,mouse hippocampal serine protease neuropsin, the human small G protein RhoA complexed with GTPgammaS,the human small G protein RhoA complexed with GTPgammaS,the HPt domain of a E.coli sensor kinase ArcB complexed with a E.coli response regulator CheY,the HPt domain of ArcB a E.coli phospho-histidine phosphatase SixA.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (53 results)

All Other

All Publications (53 results)

  • [Publications] S.Kuge: "Use of a fusion protein to obtain well-ordered" Protein Science. 6・8. 1783-1786 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato: "Crystallization and preliminary x-ray analysis of the" Acta Crystallogr. D54・1. 140-142 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "RNase T1とクアニンヌクレチドの相互作用" 蛋白質・核酸・酵素. 増巻号. 1627-1634 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "蛋白質/DNA複合体の構造研究" SR科学技術情報. 6 (1). 3-8 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "転写因子とその構造" 臨床医. 23 (5). 30-33 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "転写因子における核酸蛋白質相互作用" 日本結晶学会誌. 227-237 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato: "Crystallization and Prelimirary X-ray analysis of a histdine" Acta Crystallogr. D52 (6). 1214-1215 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Ohishi: "Interaction between the left handed Z-DNA and" FEBS Lett.391. 153-156 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Ohishi: "Interaction between the left-handed Z DNA and polyamine-3" FEBS Lett.398. 291-296 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] A.Toumoto: "Preliminary X-ray studies on a new crystal form of" Acta Crystallogr.D53 (1). 103-104 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato: "Insight into multistep phosphonelay from the crystal" Cell. 88 (5). 717-723 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Kishi: "Crystallization and preliminaryx-ray analysis of aserine" J.Struct,Biol.118. 248-251 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Shimizu: "Crystal structure of PH04 bHLH domain-DNA complex" EMBOJ. 16・15. 4689-4697 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Yaku: "Interaction between the Che Y response regulator" FEBS Lett.408・3. 337-340 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Ihara: "Crystal structuke of human RhoA" J.Biol.Chem.(in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kusumoto: "Crystallographic Claracterization of the DNA binding" J.Struct.Biol.(in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Fujii: "Crystallographic Characterization of Pap 1-DNA complex" Acta Crystallogr. (in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Sugimoto: "Dechloroacutumine a possible biosynthetic" Phytochemistry. (in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Hamada: "Crystallographic characterization of a novel protein SixA" Acta Crystallogr. (in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "薬学の進歩13" 薬学研究奨励財団, 143 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 箱嶋 敏雄: "構造生物学とその解析法" 日本生物物理学会, 192 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato, K.Ishige, T.Mizuno, T.Shimizu, & T.Hakoshima: "Crystallization and Preliminary X-ray Analysis of a Histidine Kinase Domain of the Anaerobic Sensor Protein ArcB from Escherichia coli." Acta Crystallogr. D52 (6). 1214-1215 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Ohishi, I.Nakanishi, K.Inubushi, G.Van del Marel, J.Van Boom, A.Rich, A.H.J.Wang, T.Hakoshima & K.Tomita: "Interaction between the left-handed Z-DNA and polyamine-2 : The crystal structure of the d(CG)_3 and spermidine complex." FEBS Lett.391 (1-2). 153-156 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Ohishi, I.Nakanishi, K.Inubushi, G.Van del Marel, J.Van Boom, A.Rich, A.H.J.Wang, T.Hakoshima & K.Tomita: "Interaction between the left-handed Z-DNA and polyamine-3 : The crystal structure of the d(CG)_3 and thermospermine complex." FEBS Lett.398 (2-3). 291-296 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] A.Toumoto, T.Shimizu, M.Shimizu, Y.Kyogoku, N.Ogawa, Y.Oshima & T.Hakoshima: "Preliminary X-ray studies on a new crystal form of PHO3-DNA complex." Acta Crystallogr.D53 (1). 103-104 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato, T.Mizuno, T.Shimizu & T.Hakoshima: "Insights into multi-step phosphorelay from the crystal structure of the C-terminal HPt domain of ArcB." Cell. 88 (5). 717-723 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Kishi, M.Kato, T.Shimizu, K.Kato, K.Matsumoto, S.Yoshida, S.Shiosaka & T.Hakoshima: "Crystallization and preliminary x-ray analysis a serine protease expressed in the limbic system of brain, neuropsin." J.Struct.Biol.118 (3). 248-251 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Shimizu, A.Toumoto, M.Shimizu, Y.Kyogoku, N.Ogawa, Y.Oshima & T.Hakoshima: "Crystal structure of PHO4 bHLH domain-DNA complex : Flanking base recognition." EMBO J.16 (15). 4689-4697 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Yaku, M.Kato, & T.Hakoshima, T.Mizuno: "Interaction between the Che Y response regulator and the histidine-containing phosphotransfer (HPt) domain of the ArcB sensor kinase in Escherichia coli." FEBS Lett.408 (3). 337-340 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.Kuge, Y.Fujii, T.Shimizu, F.Hirose, A.Matsukage & T.Hakoshima: "Use of a fusion protein to obtain well-ordered crystals suitable for X-ray analysis : crystallization of a GST fusion protein containing the DNA-binding domain of DNA replication related element-binding fator, DREF." Prot.Sci.6 (8). 1783-1786 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kato, T.Mizuno & T.Hakoshima: "Crystallization and Preliminary X-ray Analysis of the chemotaxis response regulator Che Y complexed with the HPt Domain of the Anaerobic Sensor Protein ArcB." Acta Crystallogr.D53 (1). 140-142 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Ihara, S.Muraguchi, M.Kato, T.Shimizu, S.Kuroda, K.Kaibuchi & T.Hakoshima: "Crystal Structure of human RhoA in a dominantly active form complexed with GTP analog." J.Biol.Chem.(in the press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Kusumoto, Y.Fujii, Y.Tsukuda, T.Ohhira, Y.Kyougoku, T.Taniguchi & T.Hakoshima: "Crystallographic characterization of the DNA-binding domain of interferon regulatory factor-2 complexed with DNA." J.Struct.Biol.(in the press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Fujii, T.Ohira, Y.Kyougoku, T.Toda, M.Yanagida & T.Hakoshima: "Crystallographic characterization of Pap1-DNA complex." Acta Crystallogr.D54, (in the press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Sugimoto, M.Kato, T.Shimizu, T.Hakoshima & A.Isogai: "Dechloroacutumine, a possible biosynthetic precursur of acutumine in Menispermum Dauricum root cultires." Phytochemistry. (in the press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Hamada, M.Kato, T.Mizuno & T.Hakoshima: "Crystallographic characterization of a novel protein SixA that exhibits phosphohistidine phosp [hatase activity in the multistep His-Asp phosphorelay." Acta crystallogr.D54 (in the press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] A.Toumoto: "Preliminary X-ray studies on a new crystal form of PHO4-DN" Acta Crystallographica. D53・1. 103-104 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Kato: "Insights into multistep phosphorelay from the crystal structur" Cell. 88・5. 717-723 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Kishi: "Crystallization and preliminary X-ray studies of neuropsin" Journal of Structural Biology. 118. 248-251 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Yaku: "Interaction between the Che Y response regulator" FEBS Letters. 408・3. 337-340 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.Kuge: "Use of a fusion protein to obtain well-ordered crystal" Protein Science. 6・8. 1783-1786 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Shimizu: "Crystal Structure of PHO4 bHLH domain-DNA complex" EMBO Journal. 16・15. 4689-4697 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 箱嶋敏雄: "薬学の進歩13" 薬学研究奨励財団, 143 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 箱嶋敏雄: "構造生物学とその解析法" 共立出版社, 192 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] A.Toumoto: "Preliminary X-ray studies on a new crystal form of PHO4-DNA complex." Acta Crystallogr.D53・1. 103-104 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] T.Shimizu: "Crystal structure of PHO4-DNA complex." EMBO J.16(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "蛋白質/DNA複合体の構造研究" SR科学技術情報. 6・1. 3-8 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "蛋白質による核酸塩基識別における特異的相互作用と非特異的相互作用" 研究成果報告集「薬学の進歩13」. 13. 73-84 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "転写因子とその構造" 臨床医. 23・5(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "転写因子におけるDNA-蛋白質相互作用" 日本結晶学会誌,. (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "シリーズ・ニューバイオフィジックス3「構造生物学とその解析法」" 核酸及び核酸・蛋白質複合体(印刷中), (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] 箱嶋敏雄: "RNase T_1とグアニンヌクレオチドの相互作用" 蛋白質核酸酵素「核酸化学の新展開」. 増刊号. 1627-1634 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 箱嶋敏雄: "蛋白質/DNA複合体の構造研究" SR科学技術情報. 6. 3-8 (1996)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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