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Tissue dependent molecular evolution : the attempt to link between molecular evolution and morphological evolution.

Research Project

Project/Area Number 07640819
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

KUMA Kei-ichi  Kyoto Univ., Graduate School of Science, Assistant Professor, 大学院・理学研究科, 助手 (10221938)

Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1997: ¥100,000 (Direct Cost: ¥100,000)
Fiscal Year 1996: ¥200,000 (Direct Cost: ¥200,000)
Fiscal Year 1995: ¥1,200,000 (Direct Cost: ¥1,200,000)
KeywordsTissue specific gene / Super gene family / Morphological evolution / Molecular evolution / Gene duplication / Evolutionary rate / Functional constraint / The neutral theory of molecular evolution
Research Abstract

In the protein kinase family, the basic function of kinase domain is similar among members. In spite of this similarity, a comparison of the evolutionary rates revealed a wide difference among members ; it amounts to about 100 times difference between the maximum and minimum rates. A similar result was also found in members of the immunoglobulin family. In addition, the evolutionary rates of family members that are expressed tissue specifically differ widely, depending on their tissue distribution : members expressed in the brain evolve with significantly slower rates than those expressed in the immune system. These low evolutionary rates of the genes which expressed in the brain (nerve cell) were also found in other gene families, such as nicotinic acetylcholine receptor, rhodopsin, aldolase, cadherin, and so on.
Furthermore, we found extensive tissue specific gene duplications and rapid rates of amino acid substitutions in the early evolution of chordates before the separation of fishes and tetrapods (period I) , while these genetic variations are relatively low in the later period (period II) . Since a variety of tissues and organs evolved rapidly in the former period, it was suggested that there exists a link between evolution at the tissue level and molecular level. To know whether or not Darwinian selection of advatageus mutation is responsible for the rapid rate of amino acid substitutions in the period I, the pattern of amino acid substitutions was analyzed using 11 different gene families. In both periods, the substitution patterns are the conservative type and are very similar to each other. The result suggests that a large fraction of amino acid substitutions observed in the period I is selectively neutral and the rapid rates might be attributed to weak functional constraints. The weak constraints also increase the ratio of advantageous mutations, although minority in number.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (15 results)

All Other

All Publications (15 results)

  • [Publications] Iwabe, N.et al.: "Molecular clock for dating of divergence between animal phyla" Jpn. J. Genet.70. 687-692 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Iwabe, N.et al.: "Evolution of Gene Families and Relationship with Organismal Evolution : Rapid Divergence of Tissue-Specific Genes in the Early Evolution of Chordates." Molecular Biology and Evolution. 13(3). 483-493 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Nikoh, N.et al.: "An estimate of divergence time of Parazoa and Eumetazoa and that of Cephaiochordata and Vertebrata and by aldolase and triose phosphate isomerase clocks." J.Mol.Evol.45(1). 97-106 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suga, H.et al.: "Intermittent divergence of the protein tyrosine kinase family during animal evolution" FEBS Lett.412(3). 540-546 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Iwabe, N., et al.: "Molecular clock for dating of divergence between animal phyla." Jpn.J.Genet.70. 687-692 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Iwabe, N., et al.: "Evolution of gene families and relationship with organismal evolution : rapid divergence of tissue specific genes in the early evolution of chordates." Mol.Biol.Evol.13(3). 483-493 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Nikoh, N., et al.: "An estimate of divergence time of Parazoa and Eumetazoa and that of Cephalo-chordata and Vertebrata by aldolase and triose phosphate isomerase clocks." J.Mol.Evol.45. 97-106 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suga, H., et al.: "Intermittent divergence of the protein tyrosine kinase family during animal evolution." FEBS Lett.412. 540-546 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Suga H.et al.: "Intermittent divergence of the protein tyrosine kinase family during animal evolution." FEBS Lett.412(3). 540-546 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Nikoh N.et al.: "An estimate of divergence time of Parazoa and Eumetazoa and that of Cephalochordata and Vertebrata by aldolase and triose phosphate isomerase clocks." J.Mol.Evol.45(1). 97-106. (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Iwabe,N.et al.: "Evolution of Gene Families and Relationship with Organismal Evolution : Rapid Divergence of Tissue-Specific Genes in the Early Evolution of Chordates." Molecular Biology and Evolution. 13(3). 483-493 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yokoyama, N. et al.: "A giant nucleopore protein which binds Ran/TC4." Nature. 376. 184-188 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Iwabe, N. et al.: "Molecular clock for dating of divergence between animal phyla." Jpn. J. Genet.70. 687-692 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Toshima, J. et al.: "Identification and Characterization of a novel protein kinase, TESK1,specifically expressed in testicular germ cells." J. Biol. Chem.270. 31331-31337 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Iwabe, N. et al.: "Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordates." Mol. Biol. Evol.(印刷中).

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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