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Genome rearrangements in Bradyrhizobium japonicum field isolates.

Research Project

Project/Area Number 07660077
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Plant nutrition/Soil science
Research InstitutionTOHOKU UNIVERSITY (1996)
Ibaraki University (1995)

Principal Investigator

MINAMISAWA Kiwamu  INSTITUTE OF GENETIC ECOLOGY,TOHOKU UNIV.ENVIRONMENTAL INFORMATION PROFESSOR, 遺伝生態研究センター, 教授 (70167667)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1996: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1995: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsBradyrhizobium japonicum / insertion sequence / genome arrangement / gene transfer / soybean / transposon / 反復配列 / DNA再編成 / ヒドロゲナーゼ
Research Abstract

Among Bradyrhizobium japonicum field isolates, I found abnormal isolates (HRS isolates) which possesses many copies of prokaryotic insertion sequences (IS), RS-alpha, RS-beta and others. We obtained physical evidence for genome rearrangements in B.japonicum HRS isolates. The symbiotic regions (nif, nod and hup) in a HRS genome were heavily subjected to insertion, deletion and other types of genome rearrangements. HRS isolates had a tandem repeat RS-alpha dimer, which may give rise to a burst of transpositional rearrangements.
Because snapback analysis showed the presence of the pairs of ISs in an opposite direction, these structures correspond to type II transposon, a compound transposon. In order to examine whether the potential compound transposon may contribute to horizontal transfer of symbiotic genes, I developed to detect nod gene transfer on agar media from B.japonicum HRS isolates to B.elkanii USDA94deltaNOD,a mutant defective in nod genes. As a result, we could obtained B.elkanii cells which acquired the nod region of the HRS isolate and IS element, FK1. The B.elkanii cells restored nodulation phenotype to siratro and production of lipo-chitin nodulation signals.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (18 results)

All Other

All Publications (18 results)

  • [Publications] Minamisawa,K.: "Soybean bradyrhizobia population dynamics" Nitrogen Fixation:Fundamentals and Applications,Kluwev. 711 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa,K.: "Evidence for genome rearangements in Bradyrhizobium joponicum field isolates" Abstract of TSPS-NSF Joint Seminar. 9 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yuhashi,K.et al.: "Bradyrhizobium elkanii induces outer wrtical root swelling in soybean" Plant Cell Physiol.36・8. 1571-1577 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa,K.et al: "Indolepyrvate pathway for indole-3-acetic a cid biosynthesis in Bradyrhizobium elkanii" Plant Cell Physiol.37・4. 449-453 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Mihamisawa,K.: "Hydrogenase actitivty of soybean nodule doubley infected with Bradyrhizobium japonicum and B.elkanii" Soil Sci.Plant Nutr.42・4. 917-920 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 南沢 究: "「遺伝生態情報の可能性」IGEシリーズNo23" 東北大学遺伝生態研究センター, 149 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K.: "Evidence for genome rearrangements in Bradyrhizobium japonicum field isolates" In Abstracts of JSPS-NSF Joint Seminar : Molecular, Physiological and Ecological Aspects of Symbiotic N_2 Fixation.9 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Yuhashi, K., Akao, S., Fukuhara, H., Tateno, E.Chun, J., Stacey, G., Hara, H., Kubota, M., Asami, T.and Minamisawa, K.: "Bradyrhizobium elkanii induces outer cortical root swelling in soybean." Plant Cell Physiol.36. 1571-1577 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K., Ogawa, K,Fukuhara, H.and Koga, J.: "Indolepyrvate pathway for indole-3-acetic acid biosynthesis in Bradyrhizobium elkanii." Plant Cell Physiol.37. 449-453 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K.and Ebihara, K.: "Hydrogenase activity of soybean nodule doubley infected with Bradyrhziboum japonicum and B.elkanii. Soil Sci." Plant Nutr.42. 917-920 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K.: "Perspectives of genetic ecology informatics." In 23ed volume in IGE series published by the Institute of Genetic Ecology, Tohoku University, Sendai. (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K., Nakatsuka, Y., Seki, T.and Isawa, T.: Soybean bradyrhizobia population dynamics : The presence of highly reiterated RS-alpha possessing field isolates in Japan. In Nitrogen Fixation : Fundamentals and Applications. Edited by I.A.Tikhonovich, N.A.Provorov, V.I.Romanov, and W.E.Newton.Kluwer Academic, 711 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Minamisawa, K. et al: "Soybean bradyrhizobia population dynamics" Nitrogen Fixation Fundamentals and Application, Kluwer. 711 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] Minamisawa, K.: "Evidence for genome rearrangements in Bradyrhizobium japonicum" Abstract of JSPS-NSF Joint Seminar. 9 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yuhashi,K.et al: "Bradyrhizobium elkanii induces outer cortical root root swelling in soybean" Plant Cell Physiol.36・8. 1571-1577 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] Minamisawa, K. et al.: "Inddepyrvate pathway for indole-3-acetic acid biosyn the sis in Bradyrhizobium elkanii" Plant Cell Physiol.37・4. 449-453 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Minamisawa, K.: "Hydrogenase activity of Soybean nodule doubley infected urth Bradyrhizobium japonicum and B. elkanii." Soil Sci. Plant Nutr.42・4. 917-920 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 南沢 究: "「遺伝生態情報の可能性」IGEシリーズ No23" 東北大学遺伝生態研究センター, 149 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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