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Analysis and application of the 16S-23S rRNA intergenic spacers in mycoplasmas

Research Project

Project/Area Number 07660398
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Basic veterinary science/Basic zootechnical science
Research InstitutionUniversity of Tokyo

Principal Investigator

HARASAWA Ryo  Faclty of Medicine, Animal center for Biomedical Research, Associste Professor, 医学部, 助教授 (70159101)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 1996: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1995: ¥1,800,000 (Direct Cost: ¥1,800,000)
KeywordsMycoplasma / Mollicutes / 16S rRNA
Research Abstract

Mycoplasmas (class Molicutes) are consisting of group of the smallest prokaryotes known that are able to grow in cell-free media, lack a cell wall, and have very small genomes with a low G+C content. Members of the genus Mycoplasma are ubiquitous in nature, and their hosts range from plants to animals. The phylogenetic analyzes of the Mycoplasma species largely depends on the 16S rRNA sequence. On the basis of the 16S rRNA sequence anlysis, the genus Mycoplasma is divided into five clsters, M.mycoides group, M.pneumoniae group, M.hyorhinis group, M.hominis group, and M.fermentans group. The genes coding for rRNA molecules of mycoplasmas are organized in operons and arranged in the order of 5'-16S-23S-5S-3', in which the individual rRNA genes are separated by internal transcribed spacer (ITS) regions. Mycoplasmas have only one or two operons for the rRNA genes. The ITS regions between the 16S and 23S rRNA genes have been shown to lack tRNA genes and to be variable in seqence and length depending on the Mycoplasma species. In this study we sequenced and analyzed the mycoplasmal ITS region between the 16S and 23S rRNA genes as an alternative to 16S rRNA,because recent studies indicate the ITS can be used as chronometers for determining the relationships of genetically closely related species, as they have higher rates of divergence than 16S rRNA genes. Our previous studies on the genus Ureaplasma indicated that the phylogenetic relationships derived from the 16S rRNA and ITS sequences are almost identical.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Harasawa,R.: "phylogenetic analysis of gene coding for 16S rRNA sequences in mammalion ureaplasmas." International Journal of Systematic Bacteriology. 46巻3号. 827-829 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa,R.: "Phylogenetic analysis of the 16S-23S rRNA intergenic spacer regions of the genus Ureaplasmas." Journal of Ueterinary Medical Science. 58巻3号. 191-195 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa,R.: "Phylogenetic analysis of Pestivirus based on the 5′ untranslated region." Acta Virologica. 40. 49-54 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sasaki,T.: "Evaluation of current sterility tests for human live viral vaccines." Bioligicals. 24. 51-55 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kojima,A.: "Detection of Mycoplasma DNA in veterinary live Vaccines by the polymerase chain reaction." Journal of Veterinary Medical Science. 58巻10号. 1045-1048 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 原澤 亮: "マイコプラズマの16S-23S rRNA遺伝子間スペーサー領域" 日本細菌学雑誌. 51巻2号. 583-588 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa,R.: "A novel repetitive sequence from Mycoplsma hyopneumoniac." Journal of Veterinary Medical Science. 57. 557-558 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] 原澤 亮: "動物細胞培養における"コンタミ"の簡易検出" 蛋白質核酸酵素. 40. 2361-2368 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Senda, M., Parrish, C.R., Harasawa, R., Gamoh, K., Muramatsu, M., Hirayama, N., and Itoh, O.: "Detectionby PCR of wild-type canine parvovirus which contaminates dog vaccines." J.Clin. Microbiol.33 (1). 110-113

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R.: "Adventitious pestivirus RNA in live virus vaccines against bovine and swine diseases." Vaccine. 13 (1). 100-103 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Matsda, K., Harasawa, R., Li, J.-L., Kasama, T., Taki, T., Hands, S., and Yamamoto, N.: "Identification of phosphocholine-containing glycoglycerolipids purified from Mycoplasma fermentans-infected human helper T-cell culture as components of M.fermentans." Microbiol. Immunol.39 (5). 307-313 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R., and Sasaki, T.: "Sequence analysis of the 5' untranslated region of pestivirus RNA demonstrated in interferons for human use." Biologicals. 23 (4). 263-269 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R., Asada, K., and Koto, I.: "A novel repetitive sequence from Mycoplasma hyopneumoniae." J.Vet. Med. Sci.57 (3). 557-558 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R., and Mizusawa, H.: "Demonstration and genotyping of pestivirus RNA from mammalian cell lines." Microbiol. Immnuol.39 (12). 979-985 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R., Lefkowitz, E.J., Glass, J., and Cassell, G.H.: "Phylogenetic analysis of the 16S-23S rRNA intergenic spacer regions of the genus Ureaplasma." J.Vet. Med. Sci.58 (3). 191-195 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Sasaki, T., Harasawa, R., Shintani, M., Fujiwara, H., Sasaki, Y., Horino, A., Kenri, T., Ishii, K., and Chino.F.: "Evaluation of current sterility tests for human live viral vaccines." Biologicals. 24. 51-55 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R.: "Phylogenetic analysis of pestivirus based on the 5' untranslated region." Acta Virol.40. 49-54 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R., and Cassell, G.H.: "Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplamas." Int. J.Syst. Bacteriol.46 (3). 827-829 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kojima A., Takahashi, T., Kijima, M., Ogikubo, Y., Tamura, Y., and Harasawa, R.: "Detection of mycoplasma DNA in veterinary live virus vaccines by the polymerase chain reaction." J.Vet. Med. Sci.58 (10). 1045-1048 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Mochizuki, M., San Gabriel, M.C., and Harasawa, R.: "Polymerase chain reaction detection of canine parvovirus and feline panleukopenia virus in fecal specimens : Comparison with virus isolation and hemagglutination assays. In PCR : Protocols for diagnosis of human and animal virus diseases (Becker, Y., and Darai, G., ed.)pp." Springer-Verlag, Berlin. 525-534 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa, R.: "PCR : Application of nested PCR to detection of mycoplasmas. In Molecular and Diagnostic Procedures in Mycoplasmology (Razin, S., and Tully, J., ed.)" vol. 2 Academic Press, New York. 75-79 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Harasawa,R.: "Phylogenetic analysis of genes coding for 16S rRNA sequences in mammalian ureaplasmas." International Journal of Systematic Bacteriology. 46巻3号. 827-829 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Harasawa,R.: "Phylogenetic analysis of the 16S-23S rRNA intergenic spacer regions of the genus Ureaplasma." Journal of Veterinary Medical Science. 58巻3号. 191-195 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Harasawa,R.: "Phylogenetic analysis of pestivirus based on the 5′ untranslated region." Acta Virologia. 40. 49-54 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Sasaki,T.: "Evaluation of current sterility tests for human live viral vaccines." Biologicals. 24. 51-55 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kojima,A.: "Detection of Mycoplasma DNA in Veterinar Live vaccines by the polymerase chain reaction." Journal of Veterinaty Medical Science. 58巻10号. 1045-1048 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 原澤 亮: "マイコプラズマの16S-23SrRNA遺伝子間スペーサー領域." 日本細菌学雑誌. 51巻2号. 583-588 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Harasawa,R.: "Molecular and Diagnostic Procedure in Mycoplasmology" Academic Press,New York, 466 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Harasawa,R.: "Adventitious pestivirus RNA in live virus vaccines against bovine and swine disease." Vaccine. 13. 100-103 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Harasawa,R.: "A novel repetitive sequence from Mycoplasma hyopneumaniae." J.Vet.Med.Sci.57. 557-558 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Harasawa,R.: "Sequence analysis of the 5'untranslated region of pestivirus RNA demonstrated in interferons for human ase." Biologicals. 23. 263-269 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Matsuda,K.: "Identification of phosphocboline-containing glycogycenolipids purified from Mycoplasma fermentans-in fected human T-call." Microbiol.Immunol.39. 307-313 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Harasawa,R.: "Characteristics of the 5'untranslated region of pestivirus RNA demonstrated in mammalin cell." Microbiol.Immunol.39. 979-985 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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