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Studies on steric structure of substrate binding site of rat spermidine synthase

Research Project

Project/Area Number 07672324
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionJosai University

Principal Investigator

SAMEJIMA Keijiro  Josai University, Fac.Pharm.Sci.Prof., 薬学部, 教授 (00072413)

Co-Investigator(Kenkyū-buntansha) NIITSU Masaru  Josai University, Fac.Pharm.Sci.Docent, 薬学部, 講師 (00077976)
SHIRAHATA Akira  Josai University, Fac.Pharm.Sci, Asso.Prof., 薬学部, 助教授 (50150107)
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1997: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1996: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1995: ¥1,200,000 (Direct Cost: ¥1,200,000)
Keywordsspermidine synthase / amino acid sequence / active site structure / MALDI-TOF-MS / SH-reagent / two functional reagent / decarboxylated S-adenosylmethionine / 二機能性試験薬
Research Abstract

1.Primary structure of rat spermidine synthase : It was interesting, using insufficient amount of rat spermidine synthase for Edman method, how to get a satisfactory information on its amino acid sequence making reference to the known sequence of mouse or human enzyme deduced from DNA.The strategy was the limited proteolysis of the rat enzyme with lysylendopeptidase and arginylendopeptidase, and specific cleavage at cystein residue with chemical reagents, followed by separation of the resulting peptides by semimicro HPLC and measurement of their mass by MALDI-TOF-MS.At least the three specific cleavage methods were necessary to assure the reliability of sequence. The results showed that the sequence of rat enzyme was principally the same as that of mouse enzyme except for Pro 11 corresponding to human enzyme, and the N terminal was acetylated. 2.Probable presence of free SH group (s) at the active site : The rat enzyme was not labeled with commercially available fluorescent SH-reagent, IAEDANS,in the presence of decarboxylated S-edenosymethionine (deAdoMet), whereas was labeled in the absence of deAdoMet, suggesting the presence of SH group around the binding site of deAdoMet. After analysis of the labeled enzyme, 4 to 6 cystein residues of known lacation were found to be labeled with IAEDANS.3.Basic research to survey amino acid residues spacially close to protein SH group : Bifunctional (SH reactive and photoaffinity labeling) reagent, AIAB,was prepared, and evaluated its usefulness for SH-protein.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (9 results)

All Other

All Publications (9 results)

  • [Publications] Akira Shirahata 他: "Enzymatic Aminopropylation of Certain Secondary Amines" Biol.Pharm.Bull.18. 355-359 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takanobu Beppu 他: "Specific Depletion of spermidine and Spermine in HTC cells Treated with Inhibitors of Aminopropyltransferases" J.Biochem.117. 339-345 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.Shirahata, H.Hosoda, N.Takahashi, T.Beppu, M.Niitsu, and K.Samejima: "Enzymatic Aminopropylation of Certain Secondary Amines" Biol.Pharm.Bull.18(2). 355-359 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Beppu, A.Shirahata, N.Takahashi, H.Hosoda, and K.Samejima: "Specific Depletion of Spermidine and Spermine in HTC Cells Treated with Inhibitors of Aminopropyltransferases" J.Biochem.117(2). 339-345 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 鮫島啓二郎: "ポリアミンの調節を目指した方法論の開発" 薬学雑誌. 117・10,11. 690-699 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Takanobu Beppu 他: "Determination of Covalently Bound Hypusine and Decxyhypusine to Protein Using Submilligram of Protein Samples by HPLC" Biol.Pharm.Bull.19・1. 1-5 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Benjamin Frydman 他: "Spemine Binds in Solution to the T4C Loop of tRNA^<phe>;Evidence from a 750MHz 'H-NMR Analysis" J.Org.Chem.61・8. 2558-2559 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akira Shirahata 他: "Enzymatic Aminopropylation of Certain Secondary Amines" Biol. Pharm. Bull.18. 355-359 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Takanobu Beppu 他: "Specific Depletion of Spermidine and Spermine in HTC Cells Treated with Inhibitors of Aminopropyltransferases" J. Biochem.117. 339-345 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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