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Mechanisims and Biological Significance of Recombination-dependent DNA Replication

Research Project

Project/Area Number 07680675
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

MASAI Hisao  University of Tokyo, Institute of Medical Science, Associate Professor, 医科学研究所, 助教授 (40229349)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1996: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 1995: ¥1,300,000 (Direct Cost: ¥1,300,000)
KeywordsDNA Replication / DNA Recombination / Recombinational Repair / DNA Helicase / D-loop / R-loop / Adaptive Mutation / Double-stranded DNA Break / DNAヘリカーゼ / Dループ / Rループ / DNAヘソカ-ゼ
Research Abstract

(1) We have constructed PriA mutant genes containng point mutations in the ATP binding domain or in the cysteine residues of the putative Zinc-finger motif.
(2) Our preliminary results indicated essential roles of both ATP-binding and Zinc-finger motifs for stable DNA replication.
(3) PriA protein binds to the R-loop structure generated at the origin of ColE1-type plasmid in vitro.
(4) The N-terminal 300 amino acids are sufficient for binding to n'-pas, a hairpin which serves as an assembly site for the phiX174-type primosome.
(5) Serach of data base lead to identificatin of six bacterial genes structurally related to E.coli PriA.Interestingly, the putative Mycoplasma PriA homologue lacks a part of the ATP binding/helicase motif, although it contains the conserved zinc-finger motif.
(6) Search of the entire nucleotide sequence of the Saccharomyces cerevisiae genome did not result in identification of a gene with convincing homology to PriA.This indicates that the structure of an eukaryotic homologue of PriA,if any, may have diverged from bacterial PriA and its related genes.
(7) We have enzymatically characterized DnaA-dependent primosome assembled at the A site.
We have discovered a novel single-stranded DNA promoter recognized by RNA polymerase holoenzyme containing sigma^<70>. Termed RPO site, this sequence serves as a promoter for the genes downstream and also as the site for primer RNA synthesis for DNA replication. RPO site is an active promoter in the form of single-strand and in the presence of SSB.We have elucidated a mode of recognition of a unique secondary structure of RPO site by RNA polymerase.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] Masai,H.: "Mecahnisms of primer RNA synthesis and D-loop/R-loop-dependent DNA replication of Escherichia coli" Biochimie. (in press). (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai,H.: "DnaA- and PriA-dependent primosomes : two distinct replication complexes for replication of Escherichia coli chromosome" Frontiers in Bioscience. 1. 49-59 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai,H.: "DnaA-dependent assembly of the ABC primosome at the A site,a single-stranded DNA containing a dnaA box" Eur.J.Biochem.230. 384-395 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai,H.: "Escherichia coli PriA protein is essential for inducible and constitutive stable DNA replications" EMBO J.13. 5338-5345 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai,H.: "Replication and transcription on single-stranded DNA templates : proteins that specifically recognize single-stranded DNA sequences with a higher order structure" Mol.Biol. (Life Sci.Adv.). 13. 19-37 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai, H.and Arai, K.: ""Mechhnisms of primer RNA synthesis and D-loop/R-loop-dependent DNA replication of Escherichia coli"" Biochimie. (in press). (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai, H., Arai, K.: ""DnaA-and PriA-dependent primosomes : two distinct replication complexes for replication of Escherichia coli chromosome"" Frontiers in Bioscience. 1. 49-59 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai, H., and Arai, K.: ""DnaA-dependent assembly of the ABC primosome at the A site, a single-stranded DNA containing a dnaA box"" Eur. J.Biochem.230. 384-395 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai, H., Asai, T., Kubota, Y., Arai, K., and Kogona, T.: ""Escherichia coli PriA protein is essential for inducible and constitutive stable DNA replications"" EMBO J.13. 5338-5345 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai, H., and Arai, K.: ""Replication and transcription on single-stranded DNA templates : proteins that specifically recognize single-stranded DNA sequences with a higher order structure"" Mol. Biol. (Life Sci. Adv.). 13. 19-37 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Masai,H.& Arai,K.: "DnaA-dependent assembly of the ABC Primosome at the Asite,a single-stranded DNA hairpin contaimiy a dnaA box" Eur.J.Biochem.230. 384-395 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] Masai,H.et.al.: "hskit,a Schizosaccharomyces pombe geve related to Saccharomyces cerevisiae CDC7,is requied for DNA replicatfion" EMBO J.14. 3094-3104 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] 正井久雄: "組み換えに依存したDNA複製の機構と生物学的意義" 実験医学 増刊. 13. 1271-1277 (1995)

    • Related Report
      1996 Annual Research Report
  • [Publications] Masai,H.& Arai,K.: "DnaA-and PriA-dependent primosomoes:two distinct replication complexes for replication of Eschericlna cti duromsome" Frontiers in Bioscience. 1. 49-58 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ikeda,M.et al: "A fusion protein library:an improved method for rapid screening and characterization of DNA binding or interacting proteins" Gene. 181. 167-171 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ikeda,M.et al: "CTBP-1/RBP-1 of Saccharomyces cerevisiae protein which binds to T-rich singlestranded DNA containing the 11 base-pair core sequence of autonomously replicating sequence,is a polydeoxypyrimidine binding protein" Eur.J.Biochem.238. 38-47 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Masai,H: "Mechanisms of Primer RNA Synthesis" Biochimie. (in press).

    • Related Report
      1996 Annual Research Report
  • [Publications] Masai,H.& Arai,K.: "DnaA-dependent assembly of the ABC primosome at the A site,a single-stranded DNA hairpin containny a duaA-box" Eur.J.Biochem.230. 384-395 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Masai,H.et al.: "hskit,a S chizosaccharomyces pombe gene related to Saccharomyces cerevisiae CDC7,is regained for DNA replication" EMBO J.14. 3094-3104 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 正井久雄: "組み換えに依存したDNA複製の機構と生物学的意義" 実験医学増刊. 13. 1271-1277 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Masai,H.& Arai,K.: "DnaA-and PriA-dependent primosomoes:two destinct replication complexes for replication of Eschericlna coli diromosome" Frontiers in Bioscience. 1. 49-58 (1996)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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