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Molecular and genetic effects of DNA base damages

Research Project

Project/Area Number 07680740
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionHIROSHIMA UNIVERSITY (1996)
Kyoto Institute of Technology (1995)

Principal Investigator

IDE Hiroshi  Hiroshima University, Graduate Department of Gene Science, Professor, 理学部, 教授 (30223126)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1996: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1995: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsDNA damage / structural alteration / thermodynamic stability / DNA polymerase / mutation / oligonucleotide / α-デオキシアデノシン / アベイシックサイト / 核酸構造
Research Abstract

DNA contains the genetic information of cells. If DNA is damaged, this results in arrest of DNA replication or mutation. In this study, molecular aspects of the alteration of DNA microstructures induced by base damages have been studied. The obtained results are further correlated with the response of DNA polymerases to the encountered base damages. The results are summarized as follows.
1.Two novel base damages that potentially introduce microstructural alteration into DNA have been identified. These include a guanine-serine adduct produced by gamma-irradiation, and oxanosine produced by nitric oxide.
2.Abasic sites extensively destabilize DNA resulting in local melting of duplex DNA.The thermodynamic and structural effects of alpha-deoxyadenosine depend on the paired base in the opposite strand.
3.alpha-Deoxyadenosine and abasic sites constitute intermediate and strong blocks to DNA replication, respectively, in vivo as well as in vitro. The former induces a single nucleotide deletion exclusively, while the latter generates base substitutions. The molecular mechanism of the differential responses of DNA polymerase to these damages can be reasonably explained by the thermodynamic and structural effects of the damages mentioned in 2.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (19 results)

All Other

All Publications (19 results)

  • [Publications] Ide,H.: "On the mechanism of preferential incorporaton of dAMP at abasic Sites in translesional DNA synthesis" Nucleic Acids Research. 23. 123-129 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ide,H.: "Influences of α-deoxyadenosine on the stability and structure of DNA. Thermodynamic and molecular mechanics studies" Biochemistry. 34. 6947-6955 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Suzuki,T.: "Isolation and characterization of a novel product,2'-deoxyoxanosine,from 2'-dexyguanosine,oligonucleotide,and calf thymus DNA treated by nitrous acid and nitric oxide" Journal of American Chemical Society. 118. 2515-25 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Terato,H.: "Highly fluorescent product in the gamma-ray induced reaction between 2'-deoxyguanosine and serine" Nucleic Acids Research Symposium Series. 35. 241-242 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Shimizu,H.: "Replication bypass and mutagenic effect of α-deoxyadenosine site-specifically incorporated into single-stranded vectors" Nucleic Acids Research. 25. 597-603 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ide,H.: "Antibodies to oxidative DNA damages : Characterization of antibodies to 8-oxopurines" Cell Biology and Toxicology. (印刷中). (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ide, H., Murayama, H., Sakamoto, S., Makino, K., Honda, K., Nakamuta, H., Sakai, M., and Sugimoto, N.: "On the Mechanism of Preferential Incorporation of dAMP at Abasic Sites in Translesional DNA Synthesis. Role of Proofreading Activity of DNA Polymerase and Thermodynamic Characterization of Model Template-Primers Containing Abasic Site." Nucleic Acids Res.23. 123-129 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ide, H., Shimizu, H., Kimura, Y., Sakamoto, S., Makino, K., Glackin, M., Wallace, S.S., Nakamuta, H., Sakaki, M.and Sugimoto, N.: "Influences of alpha-Deoxyadenosine on the Stability and Structure of DNA.Thermodynamic and Molecular Mechanics Studies." Biochemistry. 34. 6947-6955 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Suzuki, T., Yamaoka, R., Nishi, M., Ide, H.and Makino, K.: "Isolation and Characterization of a Novel Product, 2'-Deoxyoxanosine, from 2'-Deoxyguanosine, Oligonucleotide, and Calf Thymus DNA Treated by Nitrous Acid and Nitric Acid." J.Am.Chem.Soc.118. 2515-2516 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Terato, H., Yoshimura, M., Ohyama, Y., Ide, H,and Yamamoto, O.: "Highly Fluorescent Product in the Gamma-Ray Induced Reaction between 2'-Deoxyguanosine and Serine." Nucleic Acids Res.Symp.Ser.35. 241-242 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Shimizu, H., Yagi, R., Kimura, Y., Makino, K.and Ide, H.: "Replication Bypass and Mutagenic Effect of alpha-Deoxyadenosine Site-Specifically Incorporated into Single-Stranded Vector." Nucleic Acids Res.25. 597-603 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Ide, H., Kow, Y.W., Chen, B., Erlanger B.F.and Wallace S.S.: "Antibodies to Oxidative DNA Damages : Characterization of Antibodies to 8-Oxopurines." Cell Biol.and Toxicol.(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Suzuki, T.: "Isolation and characterization of a novel product, 2′-deoxyoxanisine, from 2′-deoxyguanosine, oligonucleotide, and calf thymus DNA treated by nitrous acid and nitric oxide" Journal of American Chemical Society. 118. 2515-2516 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yoshida, M.: "Preparation and characterization of DNA containing 5-formyluracil" Nucleic Acids Research Symposium Series. 35. 239-240 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Terato, H.: "Highly fluorescent product in the gamma-ray induced reaction between 2′-deoxyguanosine and serine" Nucleic Acids Research Symposium Series. 35. 241-242 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Shimizu, H.: "Replication bypass and mutagenic effect of α-deoxyadenosine site-specificallt incorporated into single-stranded vectors" Nucleic Acids Research. 25. 597-603 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yoshida, M.: "Substrate and mispairing properties of 5-formyl-2′-deoxyuridine 5′-triphosphate assessed by in vitro DNA polymerase reactions" Nucleic Acids Research. (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Ide, H.: "Antibodies to oxidative DNA damages : characterization of antibodies to 8-oxopurines" Cell Biology and Toxicology. (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Hiroshi Ide: "Structure and stability of DNA containing α-deoxyadenosine" Nucleic Acids Res.Sym.Ser.34. 81-82 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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