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Conformational Analysis and Molecular Design of Polypeptides for Creating Advanced Biomaterials

Research Project

Project/Area Number 07680959
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomedical engineering/Biological material science
Research InstitutionOsaka Prefecture University

Principal Investigator

OKA Masahito  Osaka Prefecture University, Research Institute for Advanced Science and Technology Associate Professor, 先端科学研究所, 助教授 (70203966)

Project Period (FY) 1995 – 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1996: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 1995: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywordsproteins / polypeptides / conformation / molecular mechanics / peptide synthesis / circular dicroism / helix / biomaterials / 円偏光二色性
Research Abstract

Theoretical conformational analysis was tried for the periodic polypeptides having repetitive amino-acid sequences which are found in many native periodic proteins such as collagen, elastin, bactenecin, gamma-Zein, et al., and it was shown that they form new interesting helical conformations which are supposed to relate to the molecular functions of such periodic proteins. Experimental analysis was also tried for the synthetic periodic polypeptides, and experimental results supporting the theoretical results were obtained. Moreover, theoretical conformational analysis was tried for the super secondary structures constructed by the secondary structures such as alpha-helices, beta-strands, and polyproline-II structures. It was shown that there are many super secondary structures having interesting structural character from the viewpoints designing new useful.

Report

(3 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • 1995 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Y.Ishikawa,M.Oka,T.Hayashi,A.Nishinaga,: "Theoretical analysis of α-helix hairpin structures constructed by two right-handed α-helices." Polym.J.28(1). 86-90 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M.Oka,T.Hayashi: "Six-β-strand bundle structure.A new type super secondary structure constructed by anti-parallel packing of six β-strands." Polym.J.28(1). 95-97 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Tanaka,K.Nagamoto,N.Nishino,M.Oka,: "Four α-helix bundle structure built with alternating D-and L-segments" Tetrahedron Lett.37(6). 881-884 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Hirano,A.Nakajima,M.Oka,T.Hayashi,: "Synthesis and evaluation of cell-attachment activity of RGDS-related molecules." Trans.Mater.Res.Soc,Jpn. 20. 9-12 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] J.Yoshimoto,A.Nishinaga,M.Oka,T.Hayashi,: "Theoretical conformational analysis of tetrapeptide Ac-Cys-Pro-Gly-Cys-NHMe with disulfide linkage." Polym.Bull.38(1). 109-116 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] J.Yoshimoto,A.Nishinaga,M.Oka,T.Hayashi,: "Theoretical conformational analysis of tetrapeptide Ac-Cys-Pro-Ala-Cys-NHMe with disulfide linkage." Polym.Bull. 38(2). 227-234 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Ishikawa, M.Oka, T.Hayashi, A.Nishinaga: "Theoretical analysis of alpha-helix hairpin structures constructed by two right-handed alpha-helices." Polym.J.28 (1). 86-90 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M.Oka and T.Hayashi: "Six-beta-strand bundle structure. A new type super secondary structure constructed by anti-parallel packing of six beta-strands." Polym.J.28 (1). 95-97 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Tanaka, K.Nagamoto, H.Sasaki, T.Fujimoto, N.Nishino, and M.Oka: "Four alpha-helix bundle tructure built with alternating D- and L-segments" Tetrahedron Lett.37 (6). 881-884 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Y.Hirano, K.Madenokouji, A.Nakajima, M.Oka and T.Hayashi: "Synthesis and evaluation of cell-attachment activity of RGDS-related molecules." Trans.Mater.Res.Soc, Jpn.20. 9-12 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] J.Yoshimoto, A.Nishinaga, M.Oka and T.Hayashi: "Theoretical conformational analysis of tetrapeptide Ac-Cys-Pro-Gly-Cys-NHMe with disulfide linkage." Polym.Bull. 38 (1). 109-116 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] J.Yoshimoto, A.Nishinaga, M.Oka and T.Hayashi: "Theoretical conformational analysis of tetrapeptide Ac-Cys-Pro-Ala-Cys-NHMe with disulfide linkage." Polym.Bull. 38 (2). 227-234 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] M. Oka, T. Hayashi: "Theoretical analysis on helical structures of poly (Ala-Pro-Xaa)" Reports of Progress Polymer Physics in Japan. 39. 549-552 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] M. Oka, and T. Hayashi: "Theoretical analysis on the conformational preference of amino-acid residues." Reports of Progress Polymer Physics in Japan. 39. 553-556 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] M. Kitamura, Y. Ishikawa, M. Oka, T. Hayashi: "Theoretical conformational analysis on model poly (hexapeptide) for repetitive portion of γ-zein from corn endosperm." Reports of Progress Polymer Physics in Japan. 39. 561-564 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] K. Imai, I. Ohiso, M. Oka, N. NIshi, et al.: "Interaction of Tandem Repeat Sequence in RNA Polymerase II with DNA." Peptide Chemistry. 1996 (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] T. Niidome, H. Mihara, M. Oka, H. Aoyagi, et al.: "Structure and Function of Pro/Arg-rich Repeated Region in Antibiotic Bactenecin 5." Peptide Chemistry. 1996 (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] M. Kitamura, M. Oka, T. Hayashi, Y. Hirano, et al.: "Conformational Analysis Based on Molecular Mechanics Calculations of Model Poly (hexapeptide) for Repeptitive Portion of γ-Zein." Peptide Chemistry. 1996 (印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] M.Oka and T.Hayashi: "Six-β-Strand Bundle Structure;a New Super Secondary Structure Constructed by Anti-Parallel Packing of Six β-Strands" Polymer Journal. 28. 95-97 (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Y.Ishikawa,M.Oka,T.Hayashi,and A.Nishinaga: "Theoretical Analysis of α-Helix Hairpin Structures Constructed by Two Right-Handed α-Helices" Polymer Journal. 28. 86-90 (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] M.Oka and T.Hayashi: "Theoretical Design of Super Secondary Structures Constructed by β-Strands." Peptide Chemistry. (印刷中).

    • Related Report
      1995 Annual Research Report
  • [Publications] M.Oka and T.Hayashi: "Theoretical Conformational Analysis of Periodic Polypeptides Composed of Repetitive Ala-Pro-Xaa-Yaa Sequence." Peptide Chemistry. (印刷中).

    • Related Report
      1995 Annual Research Report
  • [Publications] M.Oka,S.Iwai,Y.Ishikawa,T.Hayashi,and M.Miyazawa: "Theoretical Conformational Analysis of DNA-Binding Site in Histones" Peptide Chemistry. (印刷中).

    • Related Report
      1995 Annual Research Report
  • [Publications] M.Kitamura,Y.Ishikawa,and M.Oka: "Theoretical Conformational Analysis on Model Poly(tripeptide)s for Repetitive Portion of Outer Dence Fiber Protein from Rat Spermatozoa." Report of Progess Polymer Physics in Japan. 38. 487-490 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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