• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

MOLECULAR ANATOMY OF TRANSCRIPTION APPARATUS

Research Project

Project/Area Number 08044107
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionNATIONAL INSTITUTE OF GENETICS

Principal Investigator

ISHIHAMA Akira  NATIONAL INSTITUTE OF GENETICS,DEPARTMENT OF MOLECULAR GENETICS,PROFESSOR AND HEAD, 分子遺伝研究系, 教授 (80019869)

Co-Investigator(Kenkyū-buntansha) FUJITA Nobuyuki  NATIONAL INSTITUTE OF GENETICS,DEPARTMENT OF MOLECULAR GENETICS,ASSISTANT PROFES, 分子遺伝研究系, 助手 (90173434)
BUSBY Stephe  Sch. Biochem., Univ. Birmingham, Reader
HAYWARD Rich  Inst, Cell Mol. Biol. ・Univ. Edinburgh, Senior Lec
GLASS Roberte  UNIVERSITY OF NOTTINGHA,MEDICAL SHOOL,DEPARTMENT OF BIOCHEMISTRY,PROFESSOR, Univ. Nottingham, Professor
BUSBU Stephen J.W  UNIVERSITY OF BIRMINGHAM,SCHOOL OF BIOCHEMISTRY,PROFESSOR
HAYWARD Richards  UNIVERSITY OF EDINBURGH,INSTITUTE OF CELL AND MOLECULAR BIOLOGY,SENIOR LECTURER
Project Period (FY) 1996
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1996: ¥2,100,000 (Direct Cost: ¥2,100,000)
KeywordsRNA polymerase ; / transcription factor : / DNA-protein interaction / protein-protein interaction ; / molecular assembly ; / structure-function relation ; / Escherichia coli ; / transcription regulation / 蛋白質-蛋白質相互作用
Research Abstract

RNA polymerase plays a key role in gene transcription. Transcription apparatus in both prokaryotes and eukaryotes are composed of RNA polymerase and one or more of transcription factors. The promoter selectivity of prokaryotic RNA polymerases is modulated in two steps of molecular communications, i.e., the first step with one of sigma factors and the second step with one or more of the transcription factors. In order to understand the regulatory mechanisms of promoter selectivity of the RNA polymerase, protein-protein contact sites between subunits and between subunits and tranascription factors have been mapped by both genetic and biochemical methods. Results indicated that : the concentration and activity of seven different sigma factrs involved in the first-step differentiation in Escherichia coli vary depending on cell growth conditions ; there are about 100 different species of the second-step factors in E.coli, which can be classified into four groups depending on the contact sites on RNA polymerase subunits ; more than two factors are able to interact with the RNA polymerase independently.

Report

(2 results)
  • 1996 Annual Research Report   Final Research Report Summary
  • Research Products

    (52 results)

All Other

All Publications (52 results)

  • [Publications] Artsimovitch,I.: "Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both α and б^<70> subunits of Escherichia coli RNA polymerase." J.Biol.Chem.271. 32343-32348 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Belyaeva,T.: "Location of the C-terminal domain of the RNA polymerase alpha subunit in diggerent open complexes at the Escherichiacoli galactose operon regulatory region." Nucleic Acids Res.24・12. 2243-2251 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Eichenberger,P.: "The influence of the location of the activator binding site on the geometry of a transcriptional activation the geometry of a transcriptional activation complex in Eschericiacoli." Biochemistry. 35・48. 15302-15312 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Giladi,H.: "Identification of an UP element within the IHF binding site at the P_L1-P_L2 tandem promoter of bacteriophase λ." J.Mol.Biol.260. 484-491 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Imamura,R.: "Identification of the cdpA gene encoding cyclic 3',5'-adenosine phosophate phosphodiesterase in Escherichia coli." J.Biol.Chem.271・41. 25423-25429 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jair,K.-W.: "Ambidextrous transcription activation by Soxs : Requirement for the C-terminal domain of the RNA polymerase alpha subunit at a subset of superoxide inducible genes." Mol.Microbiol.19・2. 307-314 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jair,K.-W.: "Transcription activation of promoter of the superoxide and multiple antibiotic resistance regulation by Rob,a binding protein of the Escherichia coli origin of chromosomal replication." J.Bacteriol.178・9. 2507-2513 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jishage,M.: "Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli : Intracellular levels of four species of sigma subunit under various growth conditons." J.Bacteriol.178・18. 5447-5451 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kimura,M.: "Subunit assembly in vivo of Escherichia coli RNA polymerase : Role of the amino-terminal assembly domain of alpha subunit." Genes to Cells. 1・6. 517-528 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kusano,S.: "Promoter selectivity of Escherichia coli RNA polymerase Eσ^<70> and Eσ^<38> holoenzymes : Effect of DNA supercoiling" J.Biol.Chem.271・4. 1998-2004 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Luo,J.: "Molecular anatomy of the β' subunit of the E.coli RNA polymerase : Identification of region involved in polymerase assemblymerase : Identification of regions involved in polymerase assembly" Genes to Cells. 1・9. 819-828 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Murakami,K.: "Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element." EMBO J.15・16. 4358-4367 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Rajkumari,K.: "Effects of H-HS and potassium glutamate on σ^S-and σ^<70>-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli." J.Bacteriol.178・14. 4176-4181 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tang,Y.: "Upstream interactions at the lambda P_<RM> promoter are sequence-nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter." J.Bacteriol.178・23. 6945-6951 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Greiner,D.P.: "Synthesis of the protein cutting reagent iron (S)-1-(p-bromoacetamidebenzym) ethylenediam inetetraacetate and conjucation to cysteine side chains." Bioconjugate Chemistry. 8・1. 44-48 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jishage,M.: "Variation in RNA polymerase sigma subunit composition within different stocks Escherichia coli strain W3110." J.Bacteriol.179・3. 959-963 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kusano,S.: "Promoter selectivity control of Escherichia coli RNA polyerase Eσ^<38> holoenzyme by trehalose." J.Bacteriol. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Murakami,K.: "The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA UP element." Proc.Nat.Acad.Sci.(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Negre,D.: "DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter." Nucleic Acids Res.25・4. 713-718 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Arisimovitch, I.: "Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma^<70> subunits of Escherichiacoli RNA polymerase." J.Biol.Chem.271. 32343-32348 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Belyava, T.: "Location of the C-terminal domain of the RNA polumerase alpha subunit in different open complexes at the Escherichiacoli galactose operon regulatory region." Nucleic Acids Res.24(12). 2243-2251 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Eichenberger, P.: "The influence of the location of the activator binding site on the geometry of a transcriptional activation complex in Escherichiacoli." Biochemistry. 35(48). 15302-15312 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Giladi, H.: "Identification of an UP element within the IHF binding site at the P_L1-P_L2 tandem promoter of bacteriophage lambda." J.Mol.Biol.260. 484-491 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Imamura, R.: "Identification of the cdpA gene encoding cyclic 3', 5'-adenosine phosphophate phosphodiesterase in Escherichiacoli." J.Biol.Chem.271(41). 25423-25429 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jair, K.-W.: "Ambidextrous transcription activation by SosS : Requirement for the C-terminal domain of the RNA polymerase alpha subunit at a subset of superoxide inducible genes." Mol.Microbiol.19(2). 307-314 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jair, K.-W.: "Transcription activation of promoters of the superoxide and multiple antibiotic resistance regulation by Rob, a binding protein of the Escherichiacoli origin of chromosomal replication." J.Bacteriol.178(9). 2507-2513 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Jishage, M.: "Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli : Intracellular levels of four species of sigma subunit under various growth conditions." J.Bacteriol.178. 5447-5451 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kimura, M.: "Subunit assembly in vivo of Escherichiacoli RNA polymerase : Role of the amino-terminal assembly domain of alpha subunit." Genes to Cells. 1(6). 517-528 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Kusano, S.: "Promoter selectivity of Escherichiacoli RNA polymerase Esigma^<70> and Esigma^<38> heloenzymes : Effect of DNA sequencing" J.Biol.Chem.271(4). 1998-2004 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Luo, J.: "Molecular anatomy of the b' subunit of the E.coli RNA polymerase : Identification of region involved in polymerase assembly." Genes to Cells. 1(9). 819-828 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Murakami, K.: "Transcription factor recogniiton surface on the RNA polymerase a subunit is involved in contact with the DNA enahncer element." EMBO J.15(16). 4358-4367 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Rajkumari, K.: "Effects of H-NS and potassium glutamate on sigmaS-and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichiacoli." J.Bacteriol.178. 4176-4181 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Tang, Y.: "Upsteram interactions at the lambda PRM promoter are sequence-nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter." J.Bacteriol.178(23). 6945-6951 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Artsimovitch,I.: "Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both α and σ^<70> subunits of Escherichia coli RNA polymerase." J.Biol.Chem.271. 32343-32348 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Belyaeva,T.: "Location of the C-terminal domain of the RNA polymerase alpha subunit in diggerent open complexes at the Escherichia coli galactose operon regulatory region." Nucleic Acids Res.24・12. 2243-2251 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Eichenberger,P.: "The influence of the location of the activator binding site on the geometry of a transcriptional activation complex in Escherichia coli." Biochemistry. 35・48. 15302-15312 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Giladi,H.: "Identification of an UP element within the IHF binding site at the P_L1-P_L2 tandem promoter of bacteriophase λ." J.Mol.Biol.260. 484-491 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Imamura,R.: "Identification of the cdpA gene encoding cyclic 3',5'-adenosine phosophate phosphodiesterase in Escherichia coli." J.Biol.Chem.271・41. 25423-25429 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Jair,K.-W.: "Ambidextrous transcription activation by Soxs : Requirement for the C-terminal domain of the RNA polymerase alpha subunit at a subset of superoxide inducible genes." Mol.Microbiol.19・2. 307-314 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Jair,K.-W.: "Transcription activation of promoters of the superoxide and multiple antibiotic resistance regulation by Rob,a binding protein of the Escherichia coli origin of chromosomal replication." J.Bacteriol.178・9. 2507-2513 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Jishage,M.: "Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli : Intracellular levels of four species of sigma subunit under various growth conditons." J.Bacteriol.178・18. 5447-5451 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kimura,M.: "Subunit assembly in vivo of Escherichia coli RNA polymerase : Role of the amino-terminal assembly domain of alpha subunit." Genes to Cells. 1・6. 517-528 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kusano,S.: "Promoter selectivity of Escherichia coli RNA polymerase Eσ^<70> and Eσ^<38> holoenzymes : Effect of DNA supercoiling." J.Biol.Chem.271・4. 1998-2004 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Luo,J.: "Molecular anatomy of the b' subunit of the E.coli RNA polymerase : Identification of regions involved in polymerase assembly" Genes to Cells. 1・9. 819-828 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Murakami,K.: "Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element." EMBOJ.15・16. 4358-4367 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Rajkumari,K.: "Effects of H-HS and potassium glutamate on σ^S-and σ^<70>-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli." J.Bacteriol.178・14. 4176-4181 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Tang,Y.: "Upstream interactions at the lambda ^PRM promoter are sequence-nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter." J.Bacteriol.178・23. 6945-6951 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Greiner,D.P.: "Synthesis of the protein cutting reagent iron (S)-1-(p-bromoacetamidebenzym) ethylenediaminetetraacetate and conjucation to cysteine side chains." Bioconjugate Chemistry. 8・1. 44-48 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Jishage,M.: "Variation in RNA polymerase sigma subunit composition within different stocks Escherichia coli strain W3110." J.Bacteriol.179・3. 959-963 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Kusano,S.: "Promoter selectivity control of Escherichia coli RNA polyerase Eσ^<38> holoenzyme by trehalose." J.Bacteriol.(in press).

    • Related Report
      1996 Annual Research Report
  • [Publications] Murakami,K.: "The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA UP element." Proc.Nat.Acad.Sci.(in press).

    • Related Report
      1996 Annual Research Report
  • [Publications] Negre,D.: "DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter." Nucleic Acids Res.25・4. 713-718 (1997)

    • Related Report
      1996 Annual Research Report

URL: 

Published: 1996-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi