• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural Basis of Active Transport by Ion Pumps

Research Project

Project/Area Number 08044195
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

TOYOSHIMA Chikashi  The University of Tokyo, Institute of Molecular and Cellular Biosciences, Professor, 分子細胞生物学研究所, 教授 (70172210)

Co-Investigator(Kenkyū-buntansha) OGAWA Haruo  The University of Tokyo, Faculty of Medicine, Research Associate, 大学院・医学系研究科, 助手 (40292726)
STOKES David L  New York University Medical Center, Scirball Institute of Molecular Medicine, As, 準教授
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥5,300,000 (Direct Cost: ¥5,300,000)
Fiscal Year 1997: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1996: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordsion pump / calcium pump / active transport / three-dimensional structure / electron microscopy / structural analysis / membrane proteins
Research Abstract

The goal of this project is to elucidate the structural basis of active ion transport by analysing the three-dimensional structures of ion pumps at various stages in the transport cycle. We have been working on calcium ATPase of sarcoplasmic reticulum, which is a representative member of P-type ion pumps and responsible for relaxing muscle cells by pumping calcium ions from cytoplasm. Since only tubular and very thin three-dimensional crystals can be formed, we have put much efforts to improve the technology for image analysis. Japan side has developed programs for helical analysis and combined them with a new microscope installed in New York University to study the structures of the tubular crystals with CrATP or thapsigargin bound. As a result, we have succeeded in determining the ATP-binding site (Biopys.J., publised) and obtaining 8 * resolution maps. In these maps, 10 transmembrane helices and ion pathway can be seen (Nature, in press). These good results have been possible only with international collaboration, and 4 international travels have been made. As to the three-dimensional crystals formed in the presence of calcium, much efforts are still needed for establishing the methodology. At present, a 9 *-resolution map has been obtained showing the view of the crystal along the lipid bilayr. The structure is much different from that obtained from the tubular crystals formed in the absence of calcium. The manuscript on this work has been submitted to Biohys.J.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (31 results)

All Other

All Publications (31 results)

  • [Publications] P.Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8Å resolution" Nature. (In press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Yonekura: "The ATP binding site of Ca^<2+> -ATPase revealed by electron image analysis" Biophys.J.72. 997-1005 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.S.Young: "How to make tubular crystals by reconstitution of detergent-solubilized Ca^<2+>-ATPase" Biophys.J.72. 2545-2558 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] C.Toyoshima: "Cryo-electron microscopy of ion channels and pumps" Progress in Cell Research. 6. 63-73 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] L.G.Reddy: "Purified,reconstituted cardiac Ca^<2+>-ATPase is regulated by phospholamban but not by direct phosphorylation with Ca^<2+>/calmodulin-dependent protein kinase." J.Biol.Chem.271. 14964-14970 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Tani: "A set of computer programs for determining defocus and astigmatism in electron images" Ultramicroscopy. 65. 31-44 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Akiba: "Three-dimensional structure of bovine cytochrome bel complex by electron cryomicroscopy and helical image reconstruction." Nature Struct.Biol. 3. 553-561 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] G-W.Cheong: "Lamellar stacking in three-dimensional crystals of Ca2+-ATPase from sarcoplasmic reticulum" Biophys.J.70. 1689-1699 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Nakazato: "Two-dimensional Crystallization and cryo-electron microscopy of photosystem II." J.Mol.Biol. 257. 225-232 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] N.Hamasaki: "MEMBRANE PROTEINS:structure,function and expression control" Kyushu University Press and S.Karger AG, 413 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] P.Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8* resolution" Nature. (In press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Yonekura: "The ATP binding site of Ca^<2+>-ATPase revealed by electron image analysis" Biophys.J.72. 997-1005 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.S.Young: "How to make tubular crystals by reconstitution of detergent-solubilized Ca^<2+>-ATPase" Biophys.J.72. 2545-2558 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] C.Toyoshima: "Cryo-electron microscopy of ion channels and pumps" Prog.Cell Res.6. 63-73 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] N.Hamasaki: "MEMBRANE PROTEINS : structure, function and expression control." Kyushu University Press and Kargeeer AG. 247-255 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] L.G.Reddy: "Purified, reconstituted cardiac Ca^<2+>-ATPase is regulated by phospholamban but not by direct phosphorylation with Ca^<2+>/calmodulin-dependent protein kinase." J.Biol.Chem.271. 14964-14970 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Tani: "A set ofcomputer programs for determining defocus and astigmatism in electron images" Ultramicroscopy. 65. 31-44 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Akiba: "Three-dimensional structure of bovine cytochrome bcl complex by electron cry omicroscopy and helical image reconstruction." Naure Struct.Biol.3. 553-561 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] G-W.Cheong: "Lamellar stacking in three-dimensional crystals of Ca^<2+>-ATPase from sarcoplasmic reticulum." Biophys J.70. 1689-1699 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Nakazato: "Two-dimensional Crystallization and cryo-electron microscopy of photosystem II." J.Mol.Biol.257. 225-232 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] P.Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8Å resolution" Nature. (In press). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Yonekura: "The ATP binding site of Ca^<2+> -ATPase revealed by electron image analysis" Biophys.J.72. 997-1005 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.S.Young: "How to make tubular crystals by reconsitution of detergent-solubilized Ca^<2+> -ATPase" Biophys.J.72. 2545-2558 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] C.Toyoshima: "Cryo-electron microscopy of ion channels and pumps" Progress in Cell Research. 6. 63-73 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] N.Hamasaki: "MEMBRANE PROTEINS:Structure,function and expression control" Kyushu University Press and S.Karger AG, 413 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Tani,K.: "A set of computer programs for determining defocus and astigmatism in electron images" Ultramicroscopy. 65. 31-41 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akiba,T.: "Three-dimensional structure of bovine cytochrome bcl complex by electron cryo microscopy and helical image reconstruction" Nature Struct.Biol.3. 553-561 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Choeng,G-W.: "Lamellar stacking in three-dimensional crystals of Ca2+ -ATPase from sarcoplasmic reticulum" Biophys.J.70. 1689-1699 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Nakazato,K.: "Two-dimensional Crystallization and cryo-electron microscopy of photosystem II" J.Mol.Biol.257. 225-232 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 豊島近: "膜蛋白質の三次元構造" 物理学会誌. 51. 342-346 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 小川治夫: "電子顕微鏡とタンパク質結晶学" 日本結晶学会誌. 38. 89-94 (1996)

    • Related Report
      1996 Annual Research Report

URL: 

Published: 1996-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi