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DNA sequencing of lysA gene of a rumen protozoan species

Research Project

Project/Area Number 08044215
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research Field Applied animal science
Research InstitutionMiyazaki University

Principal Investigator

ONODERA Ryoji  Miyazaki University, Faculty of Agriculture, Professor, 農学部, 教授 (60040862)

Co-Investigator(Kenkyū-buntansha) KARRER Kathl  マルケット大学生物学科, 助教授
WHITE Brvan  イリノイ大学動物科学科, 教授
TOMITA Yoshifumi  Miyazaki University, Faculty of Agriculture, Associate Professor, 農学部, 助教授 (70113230)
KARRER Kathleen M.  Marquette University, Department of Biology, Associate Professor
WHITE Bryan A.  Illinois University, Department of Animal Science, Professor
WHITE Bryan  イリノイ大学, 動物科学科, 教授
Project Period (FY) 1996 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥6,400,000 (Direct Cost: ¥6,400,000)
Fiscal Year 1998: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1997: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1996: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsRumen protozoa / Entodinium caudatum / cDNA library / Lysine-requiring mutant of Escherichia coli / lysA screening / Diamionopimelate / Transmission electron micrograph / Endosymbiont / エンドシンピオント / ジゴキシゲニン / Entodinium caudatuin / ジアミノピメリン酸脱炭酸酵素遺伝子 / LysAスクリーニング
Research Abstract

In connection with the fact that the head investigator had discovered an ability of the rumen protozoa to synthesize lysine from diaminopirnelate (DAP), this project was conducted to screen a gene for coding DAPdecarboxylase to produce lysine (lysA) from a cDNA library of Entodinium caudsturn, one of the popular ruinen protozoa, and to determine its DNAsequence, in order to clarify whether or not the enzyme could be produced by the protozoa themselves. At first, mono-faunated goats which contain only E.caudatum as protozoa in the rinnen were prepared. Then the cDNA library was made from the protozoa collected from the goats and was used for screening lysA using lysine-requiring mutant of Escherichia coli. However, the result was negative, In the next step, the library was again used for screening lysA with digoxigenin using a probe made from the nuceotide sequences with high homology common to the lysAs of six sorts of bacteria. As a result a positive plaque was found and its DNA seque … More nce was determined. The result of the analysis of the DNA sequence, however, revealed high homologies not with lysA but with sperm-tail specific proteins and surface antigen of Paramecium. Then the nuceotide sequences with high homology common to the lysAs of six sorts of bacteria was again used as primers to examine PCR products using the cDNA library as a template, but no products were obtained. Since every trial resulted in failure as mentioned above, lysA seemed not to exist in the cDNA library. Finally we marked endosymbionts in the cells of E.caudatwn and examined the distribution of DAP decarboxylase activity in the cells. it was shown that the precipitates after centrifugation at 8,000 and 37,000 x g had high activity of the enzyme. Observations of the precipitates by a transmission electron microscope revealed that a lot of oval bacterium-like particles were included in both precipitates and the particles also existed in vesicles in the intact cells. DNA (20,000 bp) has been extracted from the particles. We already started screening lysA again from the DNA and expect to attain the initial objective. Less

Report

(4 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • 1996 Annual Research Report
  • Research Products

    (39 results)

All Other

All Publications (39 results)

  • [Publications] M.E.A.Nasser, R.Onoderaほか2: "Localization of diaminopimelate decarboxylase activity in the centrifuged fractions of the homogenate of rumen protozoon, Entodiniumu caudatum." Anim. Sci. J.70. 29-31 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser, R.Onoderaほか1: "Purification and some properties of 2,6-diaminopimelate decarboxylase from rumen protozoon, Entodinium caudatum." Anim. Sci. Technol. (Jpn.). 69. 1012-1019 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 駒谷謙司、小野寺良次ほか4: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニング(II)" 原生動物学雑誌. 31(1). 50 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 駒谷謙司、小野寺良次ほか4: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニング" 原生動物学雑誌. 30(1). 30 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Sakurada. R.Onoderaほか3: "Purification and characteristics of an autolytic chitinase of Piromyces communis OTS1 from culture medium." Curr. Microbiol.36. 48-51 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser, R.Onodera: "Some properties of 2,6-diaminopimelate decarboxylase (crude enzyme) from rumen protozoon, Entodinium caudatum." Anim. Sci, Technol. (Jpn.). 68(7). 664-666 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] R.J.Wallace, R.Onoderaほか1: "The Rumen Microbial Ecosystem (2nd Edition)" Blackie Academic & Professional, London, 719 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] R.Onodera, M.R.Aminほか1: "Rumen Microbes and Digestive Physiology in Ruminants" Japan Science Society Press, Tokyo and S.Karger, Basel, 259 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser, R.Onodera and 2 more persons: "Localization of diaminopimelate decarboxylase activity in the centrifuged fractions of the homogenate of rumen protozoon, Entodiniumu caudatum." Anim.Sci.Technol.(Jpn.). 70. 29-31 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser, R.Onodera and one more persons: "Purification and some properties of 2,6-diaminopimelate decarboxylase from rumen protozoon, Entodiniumu caudatum." Anim.Sci.Technol.(Jpn.). 69. 1012-1019 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Komatani, R.Onodera and 4 more persons: "Cloning of a chitinase gene from a rumen protozoon, Entodiniumu caudatum(II)." Jpn.J.Protozool.31(1). 50 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Komatani, R.Onodera and 4 more persons: "Cloning of a chitinase gene from a rumen protozoon, Entodiniumu caudatum." Jpn.J.Protozool.30(1). 30 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Sakurada, R.Onodera and 3 more persons: "Purification and characteristics of an autolytic chitinase of Piromyces communis OTS1 from culture medium." Curr.Microbiol.36. 48-51 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser, R.Onodera: "Some properties of 2,6-diaminopimelate decarboxylase(crude enzyme)from rumen protozoon, Entodiniumu caudatum." Anim.Sci.Technol.(Jpn.). 68. 664-666 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] R.J.Wallace, R.Onodera and one more person: The Rumen Microbial Ecosystem(2nd Edition). Blacke Academic & Professional, London., 719 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] R.Onodera M.R.Amin and one more person: Rumen Microbes and Digestive Physiology in Ruminats. Japan Science Society Press, Tokyo and S.Karger, Basel., 259 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.E.A.Nasser,R.Onoderaほか4: "Localization of diaminopimelate decarboxylase activity in thecentrifuged fractions of the homogenate of rumen protozoon,Entodiniumu caudatum." Anim.Sci.J.70. 29-31 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.E.A.Nasser,R.Onoderaほか4: "Purification and some properties of 2,6-diaminopimelate decarboxylase from rumen protozoon,Entodinium caudatum." Anim.Sci.Technol.(Jpn.). 69. 1012-1019 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 駒谷謙司、小野寺良次ほか4: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニグ(II)" 原生動物学雑誌. 31(1). 50 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 駒谷謙司、小野寺良次ほか4: "ルーメンプロトゾアEntodinium-caudatumのキチナーゼ遺伝子のクローニング" 原生動物学雑誌. 30(1). 30 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Sakurada,R.Onoderaほか3: "Purification and characteristic of an autolytic chitinase of Piromyces communis OTS1 from culture medium." Curr.Microbiol.36. 48-51 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.E.A.Nasser,R.Onodera: "Some properties of 2,6-diaminopimelate decarboxylase(crude enzyme)from rumen protozoon,Entodinium caudatum." Anim.Sci.Technol.(Jpn.). 68(7). 664-666 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] R.J.Wallace,R.Onoderaほか1: "The Rumen Microbial Ecosystem(2nd Edition)" Blackie Academic & Professional,London, 719 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] R.Onodera,M.R.Aminほか1: "Rumen Microbes and Digestive Physiology in Ruminants" Japan Science Society Press,Tokyo and S.Karger,Basel, 259 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] 駒谷 謙司、小野寺 良次 ほか4: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニング(II)" 原生動物学雑誌. 31(1)(印刷中). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 駒谷 謙司、小野寺 良次 ほか4: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニング" 原生動物学雑誌. 31(1). 30 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Sakurada, R.Onodera ほか3: "Purification and characteristic of an autolytic chitinase of Piromyces communis OTS1 from culture medium" Curr.Microbiol.36. 48-51 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.E.A.Nasser, R.Onodera: "Some properties of 2,6-diaminopimelate decarboxylase(crude enzyme)from rumen protozoon,Entodinium caudatum." Anim.Sci.Technol.(Jpn.). 68(7). 664-666 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M..R.Amin, R.Onodera: "In vitro metabolism of phenylalanine by ruminal bacteria,protozoa,and their mixture." J.Gen.Appl.Microbiol.43. 1-7 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] A.M.El-Waziry, R.Onodera: "In vitro metabolism of the stereoisomers of 2,6-diaminopimelic acid by mixed rumen protozoa and bacteria." Curr.Microbiol.33. 306-311 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] R.J.Wallace, R.Onodera ほか1: "The Rumen Microbial Ecosystem(2nd Edition)" Blackie Academic & Professional,London, 719 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] R.Onodera, M.R.Amin ほか1: "Rumen Microbes and Digestive Physiology in Ruminants" Japan Science Society Press,Tokyo and S.Karger,Basel, 259 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 駒谷謙司: "ルーメンプロトゾアEntodinium caudatumのキチナーゼ遺伝子のクローニング" 原生動物学雑誌. 30(1)(印刷中). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Amin, M. R.: "In vitro metabolism of phenylalanine by ruminal becteria, protozoa, and their mixture." J. Gen. Appl. Microbiol.43(1). 1-7 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Amin, M. R.: "Synthesis of phenylalanine and production of other related compounds from phenylpyruvic acid and phenylacetic acid by ruminal bacteria, protozoa, and their mixture in vitro." J. Gen. Appl. Microbiol.43(1). 9-15 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] El-Waziry, A. M.: "In vitro metabolism of the stereoisomers of 2,6-diaminopimelic acid by mixed rumen protozoa and bacteria." Curr. Microbiol.33(1). 306-311 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Morgavi, D. P.: "Electrophoretic forms of chitinolytic and lysozyme activities in ruminal protozoa." Curr. Microbiol.32(1). 115-118 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] El-Waziry, A. M.: Measurement of total and separate stereoisomers of diaminopimelic acid in rumen bacteria by high-performance liquid chromatography.677. 53-59 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] R. J. Wallace, R. Onodera and M. A. Cotta: "The Rumen Microbial Ecosystem" Elsevier Applied Science(印刷中), (1997)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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