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Stabilization mechanism of proteins from hyperthermophilic archaeon

Research Project

Project/Area Number 08455382
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionOsaka University

Principal Investigator

KANAYA Shigenori  Osaka University, Faculty of Engineering, Professor, 工学部, 教授 (30273585)

Co-Investigator(Kenkyū-buntansha) TAKAGI Masahiro  Osaka University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (00183434)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥7,000,000 (Direct Cost: ¥7,000,000)
Fiscal Year 1997: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1996: ¥5,200,000 (Direct Cost: ¥5,200,000)
Keywordshyperthermophile / archaea / enzyme / stability / ion pair / gene cloning / glycerol kinase / ribonuclease HII / イオンペア-ネットワーク / ズブチリシン / 超好熱始原菌 / recA蛋白質 / アルパルチルtRNA合成酵素 / ATPase / DNase / クローニング / ポリアミン
Research Abstract

To understand the mechanism, by which the proteins from hyperthermophilic archaeon which grow at the temperature higher than 95゚C adapt unusually high temperatures, we have cloned the genes encoding glycerol kinase (GK) and ribonuclease HII (RNase HII) from Pyrococcus kodakaraensis KODI (Pk). these genes were overexpressed in E.coli and the recombinant enzymes were purified to homogeneity. Heat treatment was shown to be very effective to purify these enzymes, because most of the proteins from E.coli were precipitated upon heat treatment due to thermal denaturation and removed by centrifugation. Pk-GK and Pk-RNase HII are composed of 497 and 288 amino acid residues and exist in dimeric and monomeric forms, respectively. These enzymes show unusual enzyme characteristics, such as high stability against heat inactivation and broad metal ion specificity. Comparison of the amino acid compositions of these enzymes with those of the enzymes from mesophilic sources showed the contents of the charged amino acid residues in Pk-GK and Pk-RNase HII are much higher than those in E.coli GK and E.coli RNase HII,respectively. These results suggest that an increase in the number of the ion pairs or ion-pair networks contribute to increase the stabilities of Pk-GK and Pk-RNase HII,as suggested for other enzymes from hyperthermophilic archaea. Construction of a three-dimensional model for the Pk-GK structure and comparison of it with the crystal structure of E.coli GK supports this hypothesis. We are now trying to determine the crystal structures of Pk-GK and Pk-RNase HII,and to identify amino acid substitutions that makes these enzymes more stable than mesophilic ones.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (12 results)

All Other

All Publications (12 results)

  • [Publications] Shinsuke Fujiwara: "Unusual enzyme characteristics of aspantyl-tRNA synthetase from hyperthermophilic archaeon Pyrococcus SP.KOD1" FEBS Letters. 394. 66-70 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Naeem Rashid: "Characterization of a RecA/Rad51 homologue from the hyperthernophilic archaeon Pyrococcus SP・KOD1" Nucleic Acids Research. 25. 719-726 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Raja Noor Zaliha Rahman: "Effect of heat theatment on proper Oligomeric structure formation of thermostable glutamate dehydrogemase from a hyperthermophilic archaeon" Biochem.Biophys.Res.Comm.241. 646-652 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Atsuko Akasako: "Comforonatimal stability of E.coli RNaseMI variants with a series of amino acid substitutions at a cavity within the hydrophobic core" J.Biol.Chem.272. 18686-18693 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Fujiwara, S., et al.: "Unusual enzyme characteristics of aspartyl-tRNA synthetase from hyperthermophilic archaeon Pyrococcus sp.KOD1." FEBS Lett.394. 66-70 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Rasid, N., et al.: "Characterization of a RecA/RAD51 homologue from a hyperthermophilic archaeon Pyrococcus sp.KOD1." Nucleic Acids Res.25. 719-726 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Rahman, R.N.Z.A., et al.: "Effect of heat treatment on proper oligomeric structure formation of thermostable glutamate dehydrogenase from a hyperthermophilic archaeon." Biophys.Biochem.Res.Comm.241. 646-652 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akasako, A., et al.: "Conformational stabilities of E.coli RNase HI variants with a series of amino acid substitutions at a cavity within the hydrophobic core." J.Biol.Chem.272. 18686-18693 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Naeem Rashid: "Characterization of a Rec A/RAD51 homologue from the Hyperthermophilic Archaeon Pyrococcus sp.KODI" Nucleic Acids Research. vol.25. 719-726 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Raja Noor Zaliha Rahman: "Effect of Heat Treatment on Proper Oligomeric Structure Formation of Thermostable Glutamate Dehydrogenase from a Hyperthermophilic Archaeon" Biochem.Biophys.Res.Comm.vol.241. 646-652 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Shinsuke Fujiwara: "Unusual enzyme characteristics of Asp-tRNA syrthetase from hyperthermophalic archaeon Prrococw SP.KOD1" FEBS Letters. vol.394. 66-70 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Naeem Rashid: "characterization of Rec A/RAD51 homologue from a hyperthermophilic archaeon Pyrococcue SP.KOD1" Nucleic Acids Research. Vol25. 719-726 (1997)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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