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ALTERATIONS OF CHROMATIN ORGANIZATION BY NON-DNA BINDING PROTEINS AND THEIR ROLES IN TRANSCRIPTIONAL REGULATION

Research Project

Project/Area Number 08456054
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionOsaka University

Principal Investigator

HARASHIMA Satoshi  Osaka University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (70116086)

Co-Investigator(Kenkyū-buntansha) MUKAI Yukio  Osaka University, Graduate School of Engineering, Assistant Professor, 大学院・工学研究科, 助手 (60252615)
NISHIZAWA Masahumi  Keiogijuku University School of Medicine, Lecturer, 医学部, 講師 (20218150)
Project Period (FY) 1996 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥7,800,000 (Direct Cost: ¥7,800,000)
Fiscal Year 1998: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1997: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1996: ¥3,800,000 (Direct Cost: ¥3,800,000)
KeywordsYeast / Chromatin / Mediator / Transcription / Nucleosome / Core-promoter / 基礎転写
Research Abstract

Transcirpional activation or repression in eukaryotes is believed to be accompanied by an alteration of chromatin structure. In recent years, factors which may affect nucleosome or higher-order chromatin structure begun to be unveiled in several organisms including yeast Saccharomyces cerevisiae. In this study, we focused on one of such factors, SIN4 of S.cerevisiae. Our previous study has defined two classes of promoters, those which are activated by the sin4-mutation and those which are not activated by the sin4-mutation. We analyzed the mechanisms of this differential response of the two classes of promoters to thesin4 mutation. Results of our analysis revealed that the sin4 mutation activates core promoter-dependent basal transcription but not activator-mediated transcription. From this and other observations, we suggest that activation of the basal transcription occurs through a mechanism different from activator-mediated transcriptional enhancement. In sebsequent study, we identi … More fied TUP1 and SSN6 as negative regulators of transcription of IME1, a transcriptional activator of meiosis in S.cerevisiae. It has been well established that the TUP1 and SSN6 is recruited by a gene-specific DNA-bining protein to act as a general repressor of various genes by facilitating the rigid organization of nucleosome structure. Rind is known to be a DNA-binding protein which binds to upstream of IME1 to repress the IME] transcription. However, deletion of the Rme1-binding site from IME1 promoter did not result in activation of the expression of IME1, indicating that Rme1 does not function as a DNA-binding protein to recruit the Tup1-Ssn6 repressor complex. We also examined the effect of disruption of SIR2, SIR3 and HHO1 in addition to TUP1 and Sin4, all of which are thought to repress transcription through altering chromatin structure, on transcription of all genes on chromosome VI of S.cerevisiae. Results showed that enhancement of transcription of the HSP12 and HXK1 was seen in the sir2 and sir3 disruptant. However, transcriptional enhancement of those genes ocurred without that of their adjacent genes, suggesting that chromatin-mediated repression is gene-specific event. Increased accessibility of Micrococcal nuclease to the promoter regions of HSP12 and HXK1 in the sir3 disruptant suggested that heterochromatin-like structure exists in the internal regions of the chromosome VI in addition to well-known HM loci and telomeric regions. Less

Report

(4 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • 1996 Annual Research Report

Research Products

(31 results)

All Other

All Publications (31 results)

  • [Publications] Mizuno, T.et al: "Tup1-Ssn6 general repressor is involved in repression of IME1 encoding a transcriptiona activator of meiosis in Saccharomyces cerevisiae." Current Genetics. 33. 239-247 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Takemaru, K.et al: "Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation" Molecular and Cellular Biology. 18. 4971-4976 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka, N.et al: "Isolation and characterization of an invertase and its repressor genes from Shcizosaccharomyces pombe" Biochemistry Biophsics Research Communications. 245. 246-253 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mukai, Y.et al: "The role of cystein residues in the homeodomain S.Protein Mat α2 in the in mating type control of Saccharomyces cerevisiae is not mediated by disulfide linkage." Molec.Gen.Genet.255. 166-171 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yonpakdee, C.et al.: "A putative new membrane protein, Pho86p, in the inorganic phosphate uptake system of Saccharomyces cerevisiae." Gene. 171. 41-47 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Magbanua, J.P.V., et al: "The transcriptional activators of the PHO regulon, Pho4p and Pho2p, interact directly with each other and with components of the basal transcription machinery in Saccharomyces cerevisiae." J.Biochem.121. 1182-1189 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Harashima, S.: "Role of yeast global repressors, Bel2 and Tup1, in chromatin-and nucleosome-mediated transcriptional regulation." Protein, Nucleic acid and Enzyme. 41. 1187-1197 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mukai, Y., Ohno-Yamashita, Y., Oshima, Y.Harashima, S.: "The role of cystein residues in the homeodomain protein Mat alpha 2 in the in mating type control of Saccharomyces cerevisiae is not mediated by disulfide linkage." Molec.Gen.Genet.255. 166-171 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Bun-ya, M., Shikata, K., Nakada, S., Harashima, S., Oshima, Y.: "Two new genes involved in inorganic phosphate transport in Saccharomyces cerevisiae." Current Genetics.29. 344-351 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yonpakdee, C., Bun-ya, M., Shikata, K., Ogawa, N., Harashima, S., Oshima Y.: "A putative new membrane protein, Pho86p, in the inorganic phosphate uptake system of Saccharomyces cerevisiae." Gene. 171. 41-47 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Ogawa, N., Saitoh, H., Miura, K., Magbanua, J.P.V., Bun-ya, M., Harashima, S., Oshima, Y.: "Structure and distribution of specific cis-elements for transcriptional regulation of PH084 in Saccharomyces cerevisiae." Molec.Gen.Genet.249. 406-416 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yonpakdee, C., Ogawa, N., Harashima, S., Oshima, Y.: "A putative membrane protein, Pho88p, involved in inorganic phosphate transport in Saccharomyces cerevisiae." Molec.Gen.Genet.251. 580-590 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Oshima Y., Ogawa, N., Harashima, S.: "Regulation of phosphatase synthesis in Saccharomyces cerevisiae.-a review." Gene. 179. 171-177 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Fujimori, K., Sarintip, A., Nakagawa, Y., Sugioka, S., Ohta, D., Oshima Y.Harashima S.: "Isolation and characterization of mutation affecting expression of DELTA9-fatty acid desaturase gene, OLE1, in Saccharomyces cerevisiae." FEBS Letters. 413. 226-230 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Magbanua, J.P.V., Ogawa, N., Harashima, S., Oshima., Y: "The transcriptional activators of the PHO regulon, Pho4p and Pho2p, interact directly with each other and with components of the basal transcription machinery in Saccharomyces cerevisiae." J.Biochem.121. 1182-1189 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Furiwara, D., Yoshimoto, H., Sone, H., Harashima, S., Tamai, Y.: "Transcriptional co-regulation of Saccharomyces cerevisiae alcoholacetyltransferase gene, ATF1 and DELTA-9 fatty acid desaturase gene, OLE1 by unsaturated fatty acids." Yeast. 14. 711-721 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka, N., Ohuchi, N., Mukai, Y., Osaka, Y., Ohtani, Y., Tabuchi, M., Bhuiyan, M.S.A., Fukui, H., Harashima, S., Takegawa, K.: "Isolation and characterization of an invertase and its repressor genes from Shizosaccharomyces pombe." Bioch.Biophy.Res.Comm. 245. 246-253 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Takemaru, K., Harashima, S., Ueda, H., Hirose, S.: "Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation." Mol.Cell.Biol.18. 4971-4976 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mizuno, T., Nakazawa, N., Remgsamrarn, P., Oshima, Y., Harashima, S.: "Tup1-Ssn6 general repressor is involved in repression of IME1 encoding a transcriptional activator of meiosis in Saccharomyces cerevisiae." Current Genetics. 33. 239-247 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mizuno,T.et al: "Tup1-Ssn6 general repressor is involved in repression of IME1 encoding a transcriptiona activator of meiosis in Sacharomyces cerevisiae." Ourrent Genetics. 33. 239-247 (1998年)

    • Related Report
      1998 Annual Research Report
  • [Publications] Takemaru,K.et al: "Yeast coactivator MBF1 mediates GCN4- dependent transcriptional activation" Molecular and Cellular Biology. 18. 4971-4976 (1998年)

    • Related Report
      1998 Annual Research Report
  • [Publications] Tanaka,N.et al.: "Isolation and characterization of an invertase and its repressor genes from Shcizosaccharomyces pombe" Biochemistry Biophsics Research Communications. 245. 246-253 (1998年)

    • Related Report
      1998 Annual Research Report
  • [Publications] Donny,W.et al: "A method for fusing Chromosome in Saccharomyces cerevisiae" Journal of Fermentation and Bioengineering. 83. 125-131 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mukai,Y.et al: "The role of cystein residues in the homeodomain protein Matα2 in mating-type control of Saccharomyces cerevisiae" Molecular and General Genetics. 255. 166-171 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Anamnart S.et al: "The P-OLEI gene of Pichia angusta encodas G Δ9-fatty acid desaturase and complements the oleI mutation of Saccharomyces cerevisiae" Gene. 184. 299-306 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Magbanua,J.P.V.et al: "The trans criptional activators of the PHO regulon,Pho4p and Pho2p,interact directly with eath other and with compornents of the basal transcription machienery in Saccharomyces cerevisiae" J.Biochemistry. 121. 1182-1189 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Fujimori,K.et al: "Isolation and characterization of mutations affecting expression of the Δ9-fatty acid desaturase gene,OLEI,in Saccharomyces cerevisiae" FEBS Letters. 413. 226-230 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mitsukawa,N.et al: "Overexpression of an Arabidopsis theliana high affinity phosphate transporter gene in tobacco cultured alls enhances growth under phosphate limitted conditions" Proc.Natl.Acod.Sci.94. 7098-7102 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Yonpakdee,C,et.al.: "A Putative membrane protein,Pho88p,involved in inorganic phosphate transport in Saccharomgies cerevisoae" Molecular and General Genetics. 251. 580-590

    • Related Report
      1996 Annual Research Report
  • [Publications] Oshima,Y,et.al.: "Regulation of phosphatase synthesis in Saccharomyies cerevisiae" Gene. 179. 171-177 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 原島 俊: "真核生物遺伝子転写抑制機構の階層性と多様性,-出芽酵母の転写抑制因子 Bel2とTup1-" 蛋白質・核酸・酵素. 41. 1187-1197 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-03-31   Modified: 2016-04-21  

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