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Basic Studies on the Catalytic Reaction Mechanism of Enzymeby Organic Chemical Approaches

Research Project

Project/Area Number 08456060
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ODA Jun'ichi  Kyoto University, Inst.Chem.Res., Professor, 化学研究所, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) KATO Hiroaki  Kyoto University, Inst.Chem.Res., Instructor, 化学研究所, 助手 (90204487)
HIRATAKE Jun  Kyoto University, Inst.Chem.Res., Associate Professor, 化学研究所, 助教授 (80199075)
田中 啄治  京都大学, 化学研究所, 助手 (40227145)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥7,700,000 (Direct Cost: ¥7,700,000)
Fiscal Year 1997: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1996: ¥6,200,000 (Direct Cost: ¥6,200,000)
Keywordsorganic syntesis / protein engineering / enzymatic reaction meehanism / Xray crystallography / transition-state analogue / glutathione / stereospecificity / molecular recognition / 酸素反応機構
Research Abstract

In this study, we have investigated enzymatic reaction mechanism of ATP and NADPH dependent enzymes by X-ray crystallography, site-directed mutagenesis, and synthetic organie chemistry. We subjected three CN-bond ligases having different substrate specificity ; glutathione synthetase, gamma-glutamylcysteine synthetase, and asparagine synthetase. We also subjected two tropinone reductases with differnt stereospecificity ; tropinone reductase I and II.Each of these reductases only produce tropine or PSI-tropine that are diastereomeric with each other.
The following results were archived.
1.We succeed to crystallize gamma-glutamylcysteine synthetase by alteration of its surface cysteine residues into serine residues. We also synthesized its transition state analogue inhibitors. Kinetic analysis using the inhibitiors suggested some structural motives of the active site architecture of this enzme.
2.We crystallized two tropinone reductases and solved their three-dimensional structures by multiple isomorphous replacement methods independently. The results implicated the structural basis for their stereospecific reaction.
3.We determine theimportant active site residues of asparagine synthetase by site-directed mutageneses of those residues that proposec from crystal structure analysis. We also succeed to synthesize its transition-state analogue inhibitor and the crystal structure analysis of the enzyme complexed with the inhibitor is in progress.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] 平竹 潤: "Amino phosphinic and Amino boronic Acid As a Key Element of Transition-STate Analogue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61(2). 211-218 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 加藤 博章: "動的光散乱法を用いたタンパク質の結晶化の支援法" 日本結晶学会誌. 39(4). 315-319 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 中津 亨: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Boil.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Keiji Nakajima: "Crystal Structures of Two Tropinone Reductases : Different Reaction Stereospecificities in the same protein fold" Proc.Natl.Acad.Soc.USA. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II" Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Jun Hiratake: "Amino phosphinic and Amino boronic Acid As a Key Element of Transition-STate Analogue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61(2). 211-218 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Hiroaki Kato: "Supporting Strategies of Protein Crystallization by Dynamic Light Scattering" Nippon Keshou Gakukaishi. 39(4). 315-319 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Toru Nakatsu: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Biol.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Keiji Nakajima: "Crystal Structures of Two Tropinone Reductases : Different Reaction Stereospecificities in the same protein fold" Proc.Natl.Acad.Soc.USA. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II." Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 平竹 潤: "Amino phosphinic and Aminoboronic Acid As a Key Element of Transition-State Analegue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61(2). 211-218 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 加藤博章: "動的光散乱法を用いたタンパク質の結晶化の支援法" 日本結晶学会誌. 39(4). 315-319 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 中津 亨: "Crystal Structure of Asparagine Synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase" Nature Struct.Biol.5(1). 15-19 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 中島敬二: "Crystal structures of two tropinone reductaces : different reaction stereospeciticities in the same pretein fold" Proc.Natl.Acad.Soc.USA. (in press).

    • Related Report
      1997 Annual Research Report
  • [Publications] Yamashita,Atsuko: "Crystallization and prelininary X-ray study of tropinone reductase II." Acta Crystallogr.D. (in press).

    • Related Report
      1997 Annual Research Report
  • [Publications] Takane Hara,: "A Pseudo-Michaelis Quatemary Complex in the Reverse Reaction of Ligase : Structure of Escherichia coli B Glutathione Synthetase Complexed with ADP, Glutathione and Sulfate at 2.0-Å Resolution" Biochemistry. 35. 11967-11974 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Toru Nakatsu: "Crystallization and Preliminary Crystallographic Study of Aspargine Synthetase from Escherichia coli B" Acta Crtstallogy.D. 52. 604-606 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Takao Hibi: "Structure of the multifunctional loops in the nonclassical ATP-binding fold of glutathione synthetase" Nature Struct.Biol. 3. 16-18 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 加藤博章: "有機化学とタンパク質結晶学-遷移状態アナログを用いて酵素反応機構を探る-" 日本結晶学会誌. 38. 99-104 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Makoto Katoh: "Mechanism-Based Inactivation of E.coli γ-Glutamylcysteine Synthetase by Phosphinic Acid-and Sulfoximine-Based Transition-State Analogues." Bioorg.& Med.Chem.Lett.6. 1437-1442 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Jun Hiratake: "Aminophosphonic and Aminoboronic Acids As a Key Element of Transition-State Analogue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61. 211-218 (1997)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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