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Examination of the role of subunits and lipids in cytochrome c oxidase based on x-ray crystallographic structure

Research Project

Project/Area Number 08458212
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionHimeji Institute of Technology Department of Life Science Assistant

Principal Investigator

SHINZAWA Kyoko  Himeji Institute of Technology Department of Life Science Assistant, 理学部, 助手 (70206316)

Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥6,600,000 (Direct Cost: ¥6,600,000)
Fiscal Year 1997: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1996: ¥4,400,000 (Direct Cost: ¥4,400,000)
Keywordscytochrome c oxidase / crystallization / membrane protein / lipid / mass spectroscopy / x線結晶構造 / 膜タンパク質複合体
Research Abstract

Cytochrome c oxidase, the terminal enzyme of the respiratoly chain, contains a variable number of the subunits depending on the evolutionry stage of the organism. The Paracoccus denitrificans enzymes contain three subunits, which are homologous to three mitochondrial-encoded subunits of the eukaryotic enzyme. The yeast enzymes contain additional eight nuclear-encoded subunits, the mammalian enzymes contain ten subunits. The crystal structure of bovine heart cytochrome c oxidase at 2.8 A resolution reveals eight phospholipids in this enzyme. All of thses enzyme catalize essentially same reaction in spite of the differences of the compornents. the aim of the present study is examination of the role of the additional subunits, lipids and metals from both the structures and functions. The p.denitrificas enzyme, composed of 2 subunits, was purified and crystalized. But, the collection of data was not succeeded because of the sensitivity to X-ray irradiation. Crystallization conditions of bovine heart enzyme have been improved to provide crystals which diffract x-rays up to 1.9A resolution, and the crystal structures of this enzyme were determined at 2.3A resolution. This structure reveled Na/Na site, Mg site and Zn site in addition to two hemes a and three cuppers. The composition and Structure of the phosholipids in the crystalline preparation were determined with mass spectrometry. PC,RE,PG and CL were assingned from the chromatographic pattern as well as the mass spectrometry. The MAS-MAS analysis indicate that structure of fatty acids of each phospholipids are fairly unique.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (10 results)

All Other

All Publications (10 results)

  • [Publications] Tsukihara T., Shinzawa-Itoh K., Yoshikawa S.et. al: "The Whole Structure of the 13-Subunit Oxidized Cytochrome c Oxidase" Science. 272. 1136-1144 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tsukihara T., Shinzawa-Itoh K., Yoshikawa S.et.al: "Structures of Metal Sites of Oxidized Bovine Heart Cytochrome c Oxidase at 2.8Å" Science. 269. 1069-1074 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 月原 富武、伊藤-新沢 恭子、吉川 信也: "ウシ心筋のチトクロム酸化酵素の金属中心の構造" 蛋白質、核酸、酵素. 41. 1353-1362 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tsukihara T., Aoyama H., Yamashita E., Yamaguchi H., Shinzawa-Itoh K., Nakashima R., Yaono R.and Yoshikawa S.: "The Whole Structure of the 13-Subunit Oxidized Cytochrome c Oxidase" Science. 272. 1136-1144 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tsukihara T., Aoyama H., Yamashita E., Yamaguchi H., Shinzawa-Itoh K., Nakashima R., Yaono R.and Yoshikawa S.: "Structures of Metal Sites of Oxidized Bovine Heart Cytochrome c Oxidase at 2.8 A" Science. 269. 1069-1074 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tsukihara T., Shinzawa-Itoh K., and Yoshikawa S.: "Structures of Metal Sites of Oxidized Bovine Heart Cytochrome c oxidase" Tanpakushitsu, Kakusan, Kouso. 41. 1353-1362 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Tsukihara T., Shinzawa-Itoh K., Yoshikawa S.et.al: "The Whole Structure of the 13-Subunit Oxidized Cytochrome c Oxidase" Science. 272. 1136-1144 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Tsukihara T., Shinzawa-Itoh K., Yoshikawa S.et.al: "Structure of Metal Sites of Oxidized Bovine Heart Cytochrome c Oxidase at 2.8Å" Science. 269. 1069-1074 (1995)

    • Related Report
      1997 Annual Research Report
  • [Publications] 月原富武、伊藤-新沢恭子、吉川信也: "ウシ心筋のチトクロム酸化酵素の金属中心の構造" 蛋白質、核酸、酵素. 41. 1353-1362 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Tukihara, T., Shinzawa-Itoh K., Yoshikawa S. et al: "The Whole Structure of the 13-Subunit Oxidized Cytochrome c Oxidase at 2.8Å" SCIENCE. 272. 1136-1144 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2021-10-08  

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