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Characterization of DNA sequences of junction regions and development of vectors for high frequency transformation

Research Project

Project/Area Number 08458239
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionHIROSHIMA UNIVERSITY

Principal Investigator

MORIKAWA Hiromichi  Fac.of Sci., HIROSHIMA UNIVERSITY Professor, 理学部, 教授 (00089129)

Co-Investigator(Kenkyū-buntansha) GOSIMA Naoki  Fac.of Sci., HIROSHIMA UNIVERSITY Associate Professor, 理学部, 助教授 (70215482)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥6,800,000 (Direct Cost: ¥6,800,000)
Fiscal Year 1997: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1996: ¥4,700,000 (Direct Cost: ¥4,700,000)
KeywordsTrangene / Integration / S / MAR / Position Effect / Particle Bombardment / Site-directed / Topoisomerase / Cultured tobacco cells / 組込み(integration) / site-directed / トポイソメラーゼ
Research Abstract

A 12.5-kb DNA fragment containing junction regions between transgene and genomic DNA was cloned from a transgenic tobacco cell line that was obtained by microprojectile bombardment of plasmid pCaMVNEO.Nucleotide sequence analysis of the fragement (DDBJ accession no.84238) showed that it contained a 7.7-kb core sequence (concatemer of a complete pCaMVNEO and a partial pCaMVNEO) and two identical 1.3-kb junction sequences flanking at both 5' and 3' ends of the core sequence with an inverted orientation. The 1.3-kb sequences contained topoisomerase II (Topo II) consensus sequences and AT-rich sequences that are known to be specific to the nuclear scaffold associated regions (SARs). An in vitro binding assay showed that a 507-bp fragment (designated as TJ1) taken from the 1.3-kb sequence had ability to bind to nuclear scaffold preparations of cultured tobacco cells, confirming that the 1.3-kb sequence is an S/MAR.
The yield of geneticin-resistant transformant was increased by 5- to 10-fold … More by the insertion of the 507-bp fragment at the 5' and 3' sides of the expresion cassette for the nptII gene in the plasmid. The uptII enzyme activity per copy of the gene expression per copy was 10-fold higher in the transformants that had TJ1-containing plasmid than those that had TJ1-free wild type plasmid. It is suggested that TJ1 and TJ2 sequences were very useful for transgenic technology in plants.
Three transgenic Arabidopsis lines indicating a single Southern hybridization band with a selectablegene used as probes were analyzed. The junction regions flanked by transgenes were cloned using inverse polymerase chain reaction methods. All but one of the junction regions were AT-rich sequences containingg motifs characterized by an S/MAR,and calculations showed that seven of them should have a propensity towards curvature. An in vitro binding assay to tobacco nuclear matrices proved that all junction regions had the ability to bind to nuclear matrices and showed that the two input DNA did not. Less

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] M.Takahashi: "High frequency stable transformation of Arabidopsis thaliana by particle bombardment." Jounal of Plant Research. 109・3. 331-334 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Anzai: "Transformation of Phalaenopsis by particle bombardment" Plant Cell Molecular Biology. 13・3. 265-272 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi: "Starvation treatment increase transient expression frequency of a foreign gene introduced into Eustoma gradiflorum root tissues by particle bombardment" Plant Cell Molecular Biology. 13・3. 311-311 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Inada: "Existence of three regulatory regions each containing a highly conseved motif in the promoter of plastid-encoded RNA polymerase gene (rpo B)." Plant Journal. 11・4. 883-890 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi: "Stable transformation of Eustoma grandiflorum by particle bombardment" Plant Cell Reports. (in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] G.Arimura: "Expression of the β-glucuronidase gene introduced into intact leaves attached to Arabidopsis thaliana plants by particle gun" Plant Biotechnology. (in press). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Morikawa: "In ″Pollen biotechnology for crop production and improvement″eds.by R.K. Sawhney and K.V.Shivanna,Cambridge University Press" Use of pollen in gene transfer., 448(432-437) (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Seki: "In Methods in Molecular Biology,ed.,J.Martinez-Zapater and J.Salinas,Humana Press Inc.," Transient expression of foreign genes in tissues of Arabidopsis thaliana by bombardment-mediated transformation, 300(219-225) (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi and H.Morikawa: "High frequency stable transformation of Arabidopsis thaliana by particle bombardment" Journal of Plant Research. 109. 331-334 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Anzai, Y.Ishii, M.Shichinohe, K.Katumata, C.Nojiri, H.Morikawa and M.Tanaka: "Transformation of Phalaenopsis by particle bombardment" Plant Cell Molecular Biology. 13 (3). 265-272 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi, K.Irifune, M.Hasegawa, H.Kuroda, S.Nishizawa and H.Morikawa: "Starvation treatment increases transient expression frequency of a foreign gene introduced into Eustoma gradiflorum root tissues by particle bombardment" Plant Cell Molecular Biology. 13 (3). 311-315 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Inada, M.Seki, H.Morikawa, M.Nishimura and K.Iba: "Existence of three regulatory regions each containing a highly conserved motif in the promoter of plastid-encoded RNA polymerase gene (rpo B)" Plant Journal. 11 (4). 883-890 (1977)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi, M.Nishihara, S.Yamamura, Nishizawa, K.Irifune and H.Morikawa: "Stable transformaiton of Eustoma grandiflorum by particle bombardment" Plant Cell Reports. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] G.Arimura, H.Banjo, K.Irifune, K.-H.Pwee, M.Takahashi and H.Morikawa: "Expression of the beta-glucuronidase gene introduced into intact leaves attached to Arabidopsis thaliana plants by particle gun" Plant Biotechnology. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Morikawa and M.Nishihara: Use of pollen in gene transfer.In "Pollen biotechnology for crop production and improvement" eds.by R.K.Sawhney and K.V.Shivanna, Cambridge University Press, 423-437 (1977)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Seki, A.Iida and H.Morikawa: Transient expression of foreign genes in tissues of Arabidopsis thaliana by bombardment-mediated transformation.In Methods in Molecular Biology, , ed., J.Martinez-Zapater and J.Salinas, Humana Press Inc.vol.82, 219-225 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Takahashi: "High frequency stable transformation of Arabidopsis thaliana by particle bombardment." Jounal of Plant Research. 109・3. 331-334 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Anzai: "Transformation of Phalaenopsis by particle bombardment" Plant Cell Molecular Biology. 13・3. 265-272 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Takahashi: "Starvation treatment increases transient expression frequency of a foreign gene introduced into Eustoma gradiflorum root tissues by particle bombardment" Plant Cell Molecular Biology. 13・3. 311-315 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Inada: "Existence of three regulatory regions each containing a highly conserved motif in the promoter of plastid-encoded RNA polymerase gene (rpo B)." Plant Journal. 11・4. 883-890 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Takahashi: "Stable transformation of Eustoma grandiflorum by particle bombardment" Plant Cell Reports(in press). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] G.Arimura: "Expression of the β-glucuronidase gene introduced into intact leaves attached to Arabidopsis thaliana plants by particle gun" Plant Biotechnology(in press). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Morikawa: "In “Pollen biotechnology for crop production and improvement" eds.by R.K.Sawhney and K.V.Shivanna,Cambridge University Press,pp.423-437(1997)." Use of pollen in gene transfer., 448 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Seki: "In Methods in Molecular Biology,ed.,J.Martinez-Zapater and J.Salinas,Humana Press Inc.,pp.219-225(1998)." Transient expression of foreign genes in tissues of Arabidopsis thaliana by bombardment-mediated transformation, 300 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] K. Irifune: "Stable transformation of cultured cells of liverwort marchantia polymerpha by particle bombardment" Transgenic Research. 5・1. 337-341 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] M. Takahashi: "High frequency transformation of Arabidopsis thaliana by particle bombardment" Journal of Plant Research. 109・3. 331-334 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] H. Anzai: "Transformation of Phalaenopsis by particle bombardment" Plant Cell and Molecular Biology Letters. 13・3. 265-272 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] M. Takahashi: "Starvation treatment increases transient expression frequency of a foreign gene introduced into Eustoma grandiflorum root tissues" Plant Cell and Molecular Biology Letters. 13・3. 311-315 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] H. Inada: "Existence of three regulatory regions each containing a highly conseved matif in the promoter of plastid-encoded RNA polymerase gene" Plant Journal. (in press). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Y. kawamura: "Determination of levels of NO^-_3, NO^-_2 and NH^+_4 ions in leaves of various plants by capillary electrophoresis" Plant Cell Physiology. 37・6. 878-880 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] H. Morikawa: "In "stress Respons of Photosynthetic Organisms" ed. by K. Satoh and N. Murata, Elsevier" Molecular mechanism of the metabolism, of nitrogen dioxide as an alternative ferlizer in plants (in press), 約300 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] H. Morikawa: "In "Pollen biotechnology for crop production and improvement" ed. by R. K. Sawhney and K. V. Shivana Cambridge Univ. Press" Use of pollen in gene transfer (in press), 約250 (1997)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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