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A Novel Cell-Free Peptide Synthesis Driven by Pyridine

Research Project

Project/Area Number 08555200
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 生物・生体工学
Research InstitutionUniversity of Tokyo

Principal Investigator

WATANABE Kimitsuna  University of Tokyo Graduate School of Engineering, Prof., 大学院・工学系研究科, 教授 (00134502)

Co-Investigator(Kenkyū-buntansha) OOBE Yoshitaka  Sumitomo Chemical Co.Ltd.Tsukuba Research Lab.Manager, 筑波研究所, 主席
SHIGA Akinobu  Sumitomo Chemical Co.Ltd.Tsukuba Research Lab.Head, 筑波研究所, 所長
NITTA Itaru  University of Tokyo Graduate School of Engineering, Assistant Prof., 大学院・工学系研究科, 助手 (30272404)
UEDA Takuya  University of Tokyo Graduate School of Engineering, Associate Prof., 大学院・工学系研究科, 助教授 (80184927)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥9,400,000 (Direct Cost: ¥9,400,000)
Fiscal Year 1997: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 1996: ¥8,100,000 (Direct Cost: ¥8,100,000)
Keywordsaminoglycoside / in-vitro translation / non-enzymatic tRNA binding / pre-translocational ribosome / puromycin reaction / ribosome-inactivating protein / トランスロケーション / 抗生物質 / リボソーム / テンブレート重合 / 坑生物質 / rRNA / アミノピリジン / タンパク質合成系
Research Abstract

We have already demonstrated that high concentrations (40-60%) of pyridine was able to promote polypeptide synthesis on ribosomes from various organisms without any protein factors. For better understanding the mechanism of this pyridine system, association of ribosomal subunits, assembly of ribosomal proteins, as well as translocation reaction in 60% pyridine were investigated using E.coli ribosomes. Sucrose density gradient profiles showed that while the subunits once exposed to pyridine failed to re-associate themselves in the aqueous solution even containing 20 mM Mg^<2+>, they could form the total couple in 60% pyridine. Two-dimensional gel electrophoresis of ribosomal proteins revealed that some proteins composing the three features of the large subunit, especially those included in the elongation factor-binding domain (the L7/L12 atalk and L11), were released from the reconstituted particle. Both of polyphenylalanine synthesis and translocation activities in 60% pyridine were completely abolished by neomycin, a strong inhibitor against factor-independent translocation, whereas both of the reactions were not affected at all by gypsophilin, a ribotoxin to inhibit factor-dependent translocation. A similar antibiotic inhibitor, thiostrepton, affected neither of the reactions as well, which is consistent with the fact that the antibiotics requires L11 for its binding to the ribosome. These results suggest that translocation actually occurs in the pyridine system, but in a factors-independent (spontaneous) manner.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (19 results)

All Other

All Publications (19 results)

  • [Publications] 新田 至, 他: "Template-dependent peptide formation on ribosomes catalyzed by pyridine." J.Biochem.115. 803-807 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 新田 至, 他: "A novel factor-and energy-free translation system promoted by tertiary amines and its implications toward the origin of the translation system." Viva Origino. 23. 209-222 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 新田 至, 他: "Template-dependent polypeptide symyhesis in a facter-and energy-free translation system promoted by pyridine." J.Biocham.118. 841-849 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 野島 高彦, 他: "Pyridine-promoted facter-and energy-free peptide synthesis systems prepared from various organisms including prokaryote,eukaryote,and mitochondria." J.Biochem.119. 1076-1079 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 新田 至, 他: "A novel cell-free system for peptide synthesis driven by pyridine." Biol.Chem.(印刷中). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Itaru, Nitta: "Template-dependent peptide formation on ribosomes catalyzed by pyridine." J.Biochem.115. 803-807 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Itaru, Nitta: "A novel factor-and energy-free translation system promoted by tertiary amines and its implications toward the origin of the translation system." Vira Origino. 23. 209-222 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Itaru, Nitta: "Template-dependent polypeptide synthesis in a factor-and energy-free translation system promoted by pyridine" J.Biochem.118. 841-849 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Takahiko, Nojima: "Pyridine-promoted factor-and energy-free peptide synthesis systems prepared from various organisms including prokaryote, eukaryote, and mitochondria" J.Biochem.119. 1076-1079 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Itaru, Nitta: "A novel cell-free system for peptide synthesis driven by pyridine." Bio1.Chem.(in press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 新田 至、他: "Template-dependent peptide formation on ribosomes catalyzed by pyridine." J.Biochem.115. 803-807 (1994)

    • Related Report
      1997 Annual Research Report
  • [Publications] 新田 至、他: "A novel factor-and energy-free translation system promoted by tertiary amines and its implications toward the origin of the translation system." Viva Origino. 23. 209-222 (1995)

    • Related Report
      1997 Annual Research Report
  • [Publications] 新田 至、他: "Template-dependent polypeptide synthesis in a factor-and energy-free translation system promoted by pyridine." J.Biochem.118. 841-849 (1995)

    • Related Report
      1997 Annual Research Report
  • [Publications] 野島 高彦、他: "Pyridine-promoted factor-and energy-free peptide synthesis systems prepared from various organisms including prokaryote,eukaryote,and mitochondria." J.Biochem.119. 1076-1079 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] 新田 至、他: "A novel cell-free system for peptide synthesis driven by pyridine." Biol.Chem.(印刷中). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Nojima et al: "Pyidine-psmotcd factor-and enegy-free piptide synthesis systems prepared psw Protayote;enkaryote and mitdondia" J.Biochem. 119. 1076-1079 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] T.Ohtsuki et al: "Automated chemical synthesis of Biologically active tRNA having a sequence coveoponding to Ascaris suum mitochondrial tRNA Met" J.Biochem. 120. 1070-1073 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] S.Watanabe et al.: "An RNA fragment consisting of the P7 and P9.0 stems and the 3'-terminal guanosine of the tetrahymene group I infnon" Nucl.Acids Res.24,7. 1337-1344 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] T.Suzuki et al: "A new method for identifying the amino acid attached to a paticular RNA in the cell" FEBS Letters. 381. 195-198 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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