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Precise determination of local structures of biomolecules by solid-state NMR

Research Project

Project/Area Number 08558070
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Structural biochemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

TERAO Takehiko  Kyoto Univ., Graduate school of Sci., Prof., 大学院・理学研究科, 教授 (50093274)

Co-Investigator(Kenkyū-buntansha) FUJITO Teruaki  JEOL,Service head office, section chief, 分析機器サービス本部, 課長(研究職)
KUBO Atsushi  Kyoto Univ., Graduate School of Sci., Instructor, 大学院・理学研究科, 助手 (20205115)
TAKEGOSHI Kiyonori  Kyoto Univ., Graduate School of Sci., Asso.Prof., 大学院・理学研究科, 助教授 (10206964)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥14,100,000 (Direct Cost: ¥14,100,000)
Fiscal Year 1997: ¥5,700,000 (Direct Cost: ¥5,700,000)
Fiscal Year 1996: ¥8,400,000 (Direct Cost: ¥8,400,000)
Keywordssolid state NMR / strictiral biology / internuclear distances / dihedral angle
Research Abstract

This study attempted to develop methods for precise and accurate determination of carbon-carbon and carbon-nitrogen distances as well as dihedral angles phi, psi in a particular local region of a biomolecule. It was aimed at applying to structural problems in a biology which have yet not been solved by either X-ray crystallography or solution-state NMR.
In this year, we elaborated several methods which we had developed, and applied them to the complex of streptomyces subtilisin inhibitor (SSI) and subtilisin. Structural dada, which is essential for understanding the inhibitor mechanism of SSI,was obtained
1.The methods which we had proposed, MLEV-4,4', MLEV8/8^R, RACO,and R2TR,were further developed to be used as practical tools.
2.A theory, which is vital to manipulate internal Hamiltonians by modulating amplitudes, phases, and frequencies of a radio-frequency field applied to spins, was developed. This method was applied successfully to recover anisotropic chemical shift or ^<13>C-^<15>N dipolar powder patterns under fast magic angle spinning.
3.Lattice vibration effects on distances measured by X-ray diffraction and solid-state NMR were theoretically examined.
4.The complex of streptomyces subtilisin inhibitor (SSI) and subtilisin was prepared, where the carbon and the nitrogen at the scissile bond were selectively replaced by their isotopes (^<13>C and ^<15>N).
5.The ^<13>C-^<15>N distance of the labeled SSI-subtilisin complex sample was precisely determinded, and an accelerate structure of the labeled region of the complex was deduced.
6.The structure determined as above and that obtained by X-ray diffraction were compared to discuss the inhibitor mechanism.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Y.Ishii: "Relayed anisotropy correlation NMR : determination of difedral angles in solids" Chem.Phys.Lett.256. 133-140 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi: "Deuteron 2D exchange sample-turning NMR : determination of interbond angles" Chem.Phys.Lett.260. 159-165 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi: "Modulatory resonance recoupling of heteronuclear dipolar interactions under magic angle spinning" Chem.Phys.Lett.260. 331-335 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii: "Theory and simulation of vibrational effects on structural measurements by solid-state unclear magnetic resonance" J.Chem.Phys.107・8. 2760-2774 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi: "Selective Homonuclear Polarization Transfer in the Titled Rotating Frame under Magic Angle Spinning in Solids" J.Magn.Reson.127. 206-216 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii: "Manipulation of Nuclear Spin Hamiltonians by Rf-field Modulations and its Applications to Observation of Powder Patterns under Magic Angle Spinning" J.Chem.Phys.(発表予定).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Hirao: "Solid-State NMR Study of Poly(phenylacetylene)Synthesized with a Rhodium Complex Initiator" Macromolecules. (発表予定).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii: "Determination of Peptide f Angles in Solids by Relayed Anisotropy Correlation NMR" Solid State Nucl.Magn.Reson.(発表予定).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii, et al.: "Relayd anisotropy correlation NMR : determination of dihedral angles in solids" Chem.Phys.Lett.256. 133-140 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi, et al.: "Deuteron 2D exchange sample-turning NMR : Determination of interbond angles" Chem.Phys.Lett.260. 159-165 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi, et al.: "Modulatory resonance recoupling of heteronuclear dipolar interactions under magic angle spinning" Chem.Phys.Lett.260. 331-335 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii, et al.: "Theory and simulation of vibrational effects on structural measurements by solid-state nuclear magnetic resonance" J.Chem.Phys.107(8). 2760-2774 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Takegoshi et al.: "Selective Homonuclear Polarization Transfer in the Titled Rotating Frame under Magic Angle Spinning in Solids" J.Magn.Reson.127. 206-216 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii, et al.: "Manipulation of Nuclear Spin Hamiltonians by Rf-field Modulations and its Applications to Observation of Powder Patterns under Magic Angle Spinning" J.Chem.Phys.(in press.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Hirao, et al.: "Solid-State NMR Study of Poly (phenylacetylene) Synthesized with a Rhodium Complex Initiator" Macromolecules.(in press.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii, et al.: "Determination of Peptide phi Angles in Solids by Relayd Anisotropy Correlation NMR" Solid State Nucl.Magn.Reson. (in press.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Ishii: "Relayed anisotropy correlation NMR : determination of dihedral angles in solids" Chem.Phys.Lett.256. 133-140 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Takegoshi: "Deuteron 2D exchange sample-turning NMR : determination of interbond angles" Chem.Phys.Lett.260. 159-165 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Takegoshi: "Modulatory resonance recoupling of heteronuclear dipolar interactions under magic angle spinning" Chem.Phys.Lett.260. 331-335 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Ishii: "Theory and simulation of vibrational effects structural measurements by solid state nuclear magnetic resonance" J.Chem.Phys.107・8. 2760-2774 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Takegoshi: "Selective Homonuclear Polarization Transfer in the Titled Rotating Frame under Magic Angle Spinning in Solids" J.Magn.Reson.127. 206-216 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Ishii: "Manipulation of Nuclear Spin Hamiltonians by Rf-field Modulations and its Applications to Observation of Powder Patterns under Magic Angle Spinning" J.Chem.Phys.(発表予定).

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Ishii: "Relayed amisotropy correlation NMR : determination of dihedral angles in solids" Chem.Phys.Lett.256. 133-140 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] K.Takegoshi: "Deuteron 2D exchange sample-turning NMR : determination of interbond angles" Chem.Phys.Lett.260. 159-165 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] K.Takegoshi: "Modulatory resonance recoupling of heteronuclear dipolar interactions under magic angle spinning" Chem.Phys.Lett.260. 331-335 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] A.Kubo: "Deuterium NMR Study of the Glssy Crystal Pentachlorotoluene. Hadamard Quadroupole-Order Exchange NMR" Phys.Chem.100(39). 15933-15941 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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