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A research on systematic analyzes of functions of novel genes discovered by genome project for drug development

Research Project

Project/Area Number 08672548
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionThe Institute of Physical and Chemical Research (RIKEN)

Principal Investigator

MURAKAMI Yasufumi  RIKEN,Cellular Physiology Laboratory, Senior Scientist, 細胞生理学研究室, 先任研究員 (90200279)

Co-Investigator(Kenkyū-buntansha) EKI Toshihiko  RIKEN,Cellular Physiology Laboratory, Senior Scientist, 細胞生理学研究室, 先任研究員 (40192512)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1997: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 1996: ¥1,300,000 (Direct Cost: ¥1,300,000)
Keywordsbudding yeast / genomics / gene function / receptor / gene disruption / proteome analysis / 情報科学 / 機能解析
Research Abstract

A basis for drug discovery using model organism has been developed. To determine a function of novel gene discovered by genomic research, various approaches have been applied. We chose yeast as a key model organism and we developed a method to analyze function of novel genes in a systematic way.
The genome of Saccharomyces cerevisiae was completely determined in 1996 and this project resulted with identification of 6000 genes and 4000 genes among them were novel genes. As a part of this international collaborative project, we have completely determined the sequence of chromosome VI and we identified 126 genes. We chose these genes as a model for a systematic analysis of gene function for drug diacovery, and we have established following strategies ;
(1) an efficient method for disrupting gene of yeast. By this method we can easily obtain gene-knockout clones with a efficiency of more than 30% and this is a big improvement in the order of magnitude.
(2) development of method for characterization of genes which share homologies with genes which are presumably important for drug discovery. This development includes application of the microphysiometer for analysis of yeast gene function.
(3) Development of methods for determining expression profiles of yeast genes.
(4) Development of method to express genes in various organism and method to purify gene products using affinity beads.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (34 results)

All Other

All Publications (34 results)

  • [Publications] Eki, T.: "“Cloning and characterization of novel gene,DCRR1,expressed from Down's syndrome critical region of human chromosome 21q22.2"" DNA Sequence. 7. 153-164 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohira, M.: "“Gene identification in 1.6-Mb region of the Down syndrome region on chromosome 21"" Genome Res.7. 47-58 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Naitou, M.: "“Expression profiles oh transcripts from 126 ORFs in Saccharomyces cerevisiae chromosome Vl by systematic Northern snslyse"" Yeast. 13. 1275-1290 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ishiai, M.: "“Isolation of human and fission yeast gene homologues of the budding yeast origin recognition complex subunit Orc5:Human homologue(ORC5L)maps to chromosome band 7q22"" Genomics. 46. 294-298 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Sakamoto, A.: "“Both hypertrophic and dilated cardiomyopathies are caused by mutation of the same gene delta-sarcoglycan,in hamster.An animal model of disrupted dystrophin-associated glycoprotein complex"" Proc.Natl.Acad.Sci.USA. 94. 13873-13878 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Eki, T.: "“Mapping of the human genes encoding cyclin H(CCNH)and the CDK-activating kinase(CAK)assembly factor MAT1(MNAT1)to chromosome bands 5q13.3-q14 and 14q23,respectively,"" Genomics. in press.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Toshihiko Eki, et al: "Analysis of a 36.2-kb DNA sequence including the right telomere of chromosome VI from Saccharomyces cerevisiae." Yeast. 12. 149-167 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Toshihiko Eki, et al.: "Fifteen Open Readig Frames in a 30.8-kb Region of the Right Arme of Chromosome VI from Saccharomyces cerevisiae." Yeast. 12. 177-190 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Hiroko Hagiwara, et al: "Identification of the coding region of Saccharomyces cerevisiae chromosome VI using the computer program GenMark" DNA Research. 2. 247-253 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Eki, T et al.: "A long-range physical map of the human chromosome 21q22.1 band from the YAC continuum." Mammalian Genome. 7. 303-311 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] A.Goffeau, et al.: "Life with 6000 Genes" Science. 274. 546-567 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Y.Murakami, et al.: "SYSTEMATIC ANALYSIS OF NOVEL GENES OF THE Saccharomyces cerevisiae chromosome VI" Microbial and Comparative Genomics. 3. 244 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Eki, et al.: "Mapping of the human homolog (ORC1L) of the yeast origin recognition complex subunit 1 gene to chromosome band 1p32" Genomics. 36. 559-561 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Shibata, et al.: "Inactive Allele-Specific Methylation and Chromatin Structure of the lmprinted Gene U2af1-rs1 on Mouse Chromosome 11" Genomics. 35. 248-252 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Eki, T.: ""Cloning and characterization of novel gene, DCRR1, expressed from Down's syndrome critical region of human chromosome 21q22.2"" DNA Sequence. 7. 153-164 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ohira, M.: ""Gene identification in 1.6-Mb region of the Down syndrome region on chromosome 21"" Genome Res.7. 47-58 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Naitou, M.: ""Expression profiles of transcripts from 126 ORFs in Saccharomyces cerevisiae chromosome VI by systematic Northern analyze"" Yeast. (in press). (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ishiai, M.: ""Isolation of human and fission yeast gene homologues of the budding yeast origin recognition complex subunit Orc5 : Human homologue (ORC5L) maps to chromosome band 7q22"" Genomics. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Eki, T.: ""Mapping of the human genes encoding cyclin H (CCNH) and the CDK-activating kinase (CAK) assembly factor MAT1 (MNAT1) to chromosome bands 5q13.3-q14 and 14q23, respectively"" Genomics. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Goffeau, A., et al.: ""Yeast Genome Directory"" Nature Supplement to Vol387,29 May. (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Sakamoto, A.: ""Both hypertrophic and dilated cardiomyopathies are caused by mutation of the same gene, delta-sarcoglycan, in hamster : An animalmodel of disrupted dystrophin-associated glycoprotein complex"" Proc.Natl.Acad.Sci.USA. 94. 13873-13878 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Nakazato, A.: ""Comparison of the structural characteristics of chromosome VI in Saccharomyces sensu stricto : The divergence, species-dependent features and uniqueness of Sake yeast"" Yeast. (in press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Eki,T.: "“Cloning and characterization of novel gene,DCRR1,expressed from Down's syndrome critical region of human chromosome 21q22.2"" DNA Sequence. 7. 153-164 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ohira,M.: "“Gene identification in 1.6-Mb region of the Down syndrome region on chromosome 21"" Genome Res.7. 47-58 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Naitou,M.: "“Expression profiles of transcripts from 126 ORFs in Saccharomyces cerevisiae chromosome VI by systematic Northem analyse"" Yeast. 13. 1275-1290 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ishiai,M.: "“Isolation of human and fission yeast gene homologues of the budding yeast origin recognition complex subunit Orc5 : Human homologue (ORC5L) maps to chromosome band 7q22"" Genomics. 46. 294-298 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Sakamoto,A.: "“Both hypertrophic and dilated cardiomyopathies are caused by mutation of the same gene delta-sarcoglycan,in hamster. An animal model of disrupted dystrophin-associated glycoprotein complex"" Proc.Natl.Acad.Sci.USA. 94. 13873-13878 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Eki,T.: "“Mapping of the human genes encoding cyclin H(CCNH) and the CDK-activating kinase (CAK) assembly tactor MAT1 (MNAT1) to chromosome bands 5q13.3-q14 and 14q23,respectively"," Genomics. (in press).

    • Related Report
      1997 Annual Research Report
  • [Publications] Eki,T: "a long-ranje physical mwp of the humun clnomosorotl q22.1 bancl from the YAC continuurn" Mammalian Genome. 7. 303-311 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Goffecw,A.: "Life with 6000 genes" Science. 274. 546-567 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] T.Eki: "Mappins of the human homoloy (ORCIL) of the yeast origin recognition complex subumit gere to the chrormosonl band/p32," Genomics. 36. 559-561 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] H.Shibata.: "Inactive allele-specific methylation and chromatin structure. of the imprinted gene V2af1-rs/on H/oue chorael" Genomics. 35. 248-252 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Y.Murakami: "Systematic analysis of novelgenes of the Sacchanomipo conevisiae chrocaosone VI" Microbial and Comparative Genomics. 3. 244- (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 村上康文: "酵母ゲノムの全塩基配列が決定された" 現代化学. 9. 32-37 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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