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Diversity of aromatic compound-degrading genes in relation to soil capacity to protect from pollution

Research Project

Project/Area Number 08680602
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 環境保全
Research InstitutionNagoya university

Principal Investigator

KATAYAMA Arata  Nagoya University, School of Agricultural Sciences, Associate professor, 農学部, 助教授 (60185808)

Co-Investigator(Kenkyū-buntansha) TOYOTA Koki  Nagoya University, School of Agricultural Sciences, Assisstant professor, 農学部, 助手 (30262893)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 1997: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1996: ¥1,300,000 (Direct Cost: ¥1,300,000)
Keywordssoil microorganisms / community structure / biodiversity / halogenated aromatics / oxygenase genes / PCR amplification / biomerkers / microbial degradation / 構造 / 基質資化性 / ファミリー遺伝子 / Biologプレート
Research Abstract

It is indispensable to develop the sustainable agriculture on the earth. To realize the sustainable agriculture, it is essential to develop the technology to protect the soil fertility from various stresses such as pesticides and mono-cropping, and keep the soil microbial diversity. In this study, we investigate the structure and diversity of soil microorganisms and ita relation wity the capacity of soil to protect from the chemical stresses.
The extraction method of soil DNA was optimized. The PCR amplifications of16SrDNA using universal primet sets and endonuclease digestion showed specific patterns of restriction fragment length polymorphism in the soils recieving different fertilizing practices. Melitng point measurement revealed the increase in high G+C DNA in the soil receiving farmyard manure. This results were compared with other methods to anaiyze the microbial community structure in soil : phospholipid fatty acids composition, respiratory quinone profile, Biolog^<<encircledR>> plate substrate assimilation test. The increase in the high G+C DNA was comfirmed. The soil capacity to protect from chemical stresses was examined by measuring the degradation rate of pentachlorophenol (PCP) and 2,4,5,6-tetrachl oroisophthalonitrile (TPN) in soil. The soil receiving farmyard manure degraded them faster. The major degrading microorganisms were a Gram-negative rod for PCP and various fungi (especialy Fusarium spp.) for TPN.The active microhial gropus for the degradation capacity did not admit with the tendency of total microbial community structure in soil. The detestion of oxgenase genes such as bphc was also tried by PCR amplification method.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (18 results)

All Other

All Publications (18 results)

  • [Publications] Fujimura, Y.et al.: "Bioavailability and biodegradation rate of DDT by Bacillusq B75 in the presence of dissolved lamic substances" Soil Science and Plant Nutrition. 42. 375-381 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mori, T.et al.: "Accelerated microbial degradation of chlorothalonil in soil amended with farmyard manure" Soil Science and Plant Nutrition. 42. 315-322 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Katayama, A.et al.: "Ubiquitous capability to substitute chlorine of chlorothalonil in bacteria" Journal of Pesticide Science. 22. 12-16 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ikeda, K.et al.: "Effect of soil compaction on the microbial populations on melone and maize rhizoplane" Plant and Soil. 189. 91-96 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Fujimura, Y.et al.: "Estimation of DDT availability to DDT-degrading bacterium in soil by direct extraction method of bacterial cells" Chemosphere. 35. 335-341 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Katayama, A.et al.: "Recovery size distribution and physiology of bacteria directly extracted from soil" Soil Science and Plant Nutrition. 44(印刷中). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Fujimura, Y., Kuwatsuka, S.and Katayama, A.: "Bioavailability and biodegradation rate of DDT by Bacillus sp. B75 in the presence of dissolved humic substances" Soil.Sci.Plant.Nutr.42. 375-381 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Mori, T.Fujie, K.Kuwatsuka, S.and Katayama, A.: "Accelerated microbial degradation of chlorothalonil in soil amended wity farmyard manure" Soil.Sci.Plant.Nutr.42. 315-322 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Katayama, A.Ukai, T.and Itoh, T.: "Ubiquitous capability to substitute chlorine of chlorothalonil in bacteria" J.Pesticide Sci.22. 12-16 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Ikeda, K., Toyota, K.and Kimura, M.: "Effects of soil compaction on the microbial populations on melon and maize rhizoplane" Plant and Soil. 189. 91-96 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Fujimura, Y.and Katayama, A.: "Estimation of DDT availability to DDT-degrading baterium in soil by direct extraction method of bacterial cells" Chemosphere. 35. 335-341 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Katayama, A.Kai, K.and Fujie, K.: "Recovery, size distribution and physiology of bacteria directly extracted from soil" Soil Sci.Plant Nutr.44(in printing). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Fujimura,Y.et al.: "Bioavailability and biodegradation rate of DDT by Bacillus sp.B75 in the presence of dissolved humic substances" Soil Science and Plant Nutrition. 42. 375-381 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mori,T.et al.: "Accelerated microbial degradation of chlorothalouil in soil amended with farmyard manure" Soil Science and Plant Nutrition. 42. 315-322 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Katayama,A.et al.: "Ubiquitous copobility to sybstitute chlorine of chlorothalouil in bacteria" Journal of Pesticide Science. 22. 12-16 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ikeda,K.et al.: "Effect of soil compaction on the microbial populations on the melone and maize rhizoplane" Plant and Soil. 189. 91-96 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Fujimura,Y.et al.: "Estimotion of DDT availability to DDT-degrading bacterium in soil by direct extraction methocl of bacterial cells" Chemosphere. 35. 335-341 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Katayama,A.et al.: "Recovery, size distribution and physiology of bacteria directly oxtracted from soil" Soil Science and Plant Nutrition. 44(印刷中). (1998)

    • Related Report
      1997 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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