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Origine and Molecular Evolutionary Engineering of the Enzyme-Coenzyme Systems

Research Project

Project/Area Number 08680683
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

YOSHIMURA Tohru  Kyoto University・Institute for Chemical Research, Associate Professor, 化学研究所, 助教授 (70182821)

Co-Investigator(Kenkyū-buntansha) ESAKI Nobuyoshi  Kyoto University・Institute for Chemical Research, Professor, 化学研究所, 教授 (50135597)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 1997: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 1996: ¥1,200,000 (Direct Cost: ¥1,200,000)
Keywordscoenzyme / molecular evolution / pyridoxal phosphate / stereochemistry / aminotransafearse / lyase / glutamate racemase
Research Abstract

The stereospecificities for the hydrogen transfer between C-4' of the cofactor and substrate in the transamination catalyzed by various pyridoxal 5'-phosphate (PLP)-dependent enzymes have been studied. The stereospecificities reflect the active-site structures of the enzymes, especially the topographical situation of a coenzyme-substrate Schiff base and a catalytic base for the hydrogen transfer. We found that three types of enzymes catalyzing the reaction stereospecifically on either si-or re-face of the planar intermediate, and alternatively non-stereospecifically on both faces. The classification of PLP-enzymes based on the stereospecificcity for the hydrogen transfer coincident with that based on their primary and three dimensional structures. These suggest that PLP-enzymes have been evolved from at least three different ancestral proteins. These studies lead us the speculation that enzymes requiring coenzymes were created by the combination of the inherently active coenzymes and protein offering the place of the reactions. We attempted to produce a new enzyme by combining a hemin and glutamate recemase showing a significant similarity with mammalian myoglobins in their primary structures.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Jhee, K.-H.: "Stereospecificity of Thermostable Ornithine 5-Aminotransferase for the Hydrogen Transfer in the L-and D-Ornithine Transamination" Biochemistry. 35巻30号. 9792-9796 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yoshimura, T.: "Stereospecificity for the Hydrogen Transfer and Molecular Evolution of Pyridoxal Enzymes" Biosci.Biotech.Biochem.60巻2号. 181-187 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 吉村 徹: "細菌のD-アミノ酸代謝関連酵素の構造と機能の特性" 日本農芸化学会誌. 70巻1号. 15-20 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 吉村 徹: "D-アミノ酸の役割 生理作用と代謝をめぐって" 現代化学. 12号. 14-19 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Liu, L.: "Cloning and Expression of the Glutamate Racemase Gene of Bacillus pumilus" Journal of Biochemistry. 121巻6号. 1155-1161 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Lim, Y.-H.: "Nonstereospecific Transamination Catalyzed by Pyridoxal Phosphate-dependent Amino Acid Racemases of Broad Substrate Specificity" The Journal of Biological Chemistry. 273巻7号. 4011-4015 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Jhee, K.H.et al.: "Stereospecificity of Thermostable Ornithine 5-Aminotransferase for the Hydrogen Transfer in the L-and D-Ornithine Transamination" Biochemistry. 35(30). 9792-9796 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yoshimura, T.et al.: "Stereospecificity for the Hydrogen Transfer and Molecular Evolution of Pyridoxal Enzymes" Biosci.Biotech.Biochem.60(2). 181-187 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yoshimura, T.: "Structure and Function of Bacterial D-Amino Acid-Related Enzymes Enzymes" Nippon Nougeikagaku kaishi. 70(1). 15-20 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yoshimura, T.et al.: "Role of D-Amino Acids" Gendai Kagaku. 12(309). 14-19 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Liu, L.et al.: "Cloning and Expression of the Glutamate Racemase Gene of Bacillus pumilus" J.Biochem.121(6). 1155-1161 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Lim, Y.H.: "Nonstereospecific Transamination Catalyzed by Pyridoxal Phosphate-dependent Amino Acid Racemases of Broad Substrate Specificity" J.Biol.Chem.273(7). 4011-4015 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Jhee,K.-H.: "Stereospecificity of Thermostable Ornithine 5-Aminotransferase for the Hydrogen Transfer in the L-and D-Ornithine Transamination" Biochemistry. 35巻30号. 9792-9796 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Yoshimura,T.: "Stereospecificity for the Hydrogen Transfer and Molecular Evolution of Pyridoxal Enzymes" Biosci.Biotech.Biochem.60巻2号. 181-187 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] 吉村 徹: "細菌のD-アミノ酸代謝関連酵素の構造と機能の特性" 日本農芸化学会誌. 70巻1号. 15-20 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] 吉村 徹: "D-アミノ酸の役割 生理作用と代謝をめぐって" 現代化学. 12号. 14-19 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Liu,L.: "Cloning and Expression of the Glutamate Racemase Gene of Bacillus pumilus" Journal of Biochemistry. 121巻6号. 1155-1161 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Lim,Y.-H.: "Nonstereospecific Transamination Catalyzed by Pyridoxal Phosphate-dependent Amino Acid Racemases of Broad Substrate Specificity" The Journal of Biological Chemistry. 273巻7号. 4011-4015 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] Jhee,K.-H.: "Stereospecificity of Thermostable Ornithine 5-Aminotransferase for the Hydrogen Transfer in the L-and D-Ornithine Transamination" Biochemistry. 35巻30号. 9792-9796 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Yoshimura,T.: "Stereospecificity for the Hydrogen Transfer and Molecular Evolution of Pyridoxal Enzymes" Biosci.Biotech.Biochem.60巻2号. 181-187 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 吉村 徹: "細菌のD-アミノ酸代謝関連酵素の構造と機能の特性" 日本農芸化学会誌. 70巻1号. 15-20 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] 吉村 徹: "D-アミノ酸の役割 生理作用と代謝をめぐって" 現代化学. 12号. 14-19 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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