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Capturing Transit Structures by Kinetic Crystallography

Research Project

Project/Area Number 09044217
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ODA Jun'ichi  KYOTO UNIVERSITY Inst.Chem.Res., Professor, 化学研究所, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) NAKATSU Toru  KYOTO UNIVERSITY Inst.Chem.Res., Associate Instructor, 化学研究所, 教務職員 (50293949)
KATO Hiroaki  KYOTO UNIVERSITY Inst.Chem.Res., Instructor, 化学研究所, 助手 (90204487)
WAKATSUKI Soichi  ESRF,Beamline Corespondence, ビームライン責任者
SCHLICHTING Ilme  Max-Planck_institute for Mol.Physiol., Group Reader, グループ主任
Project Period (FY) 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 1997: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordstime-resolved crystallography / enzyme / protein crystallography / caged compound / synchronization of reaction / Laue diffraction / 時分割X線結晶解析 / タンパク質結晶学
Research Abstract

To investigate the action of functional proteins such as enzymes, it is essential to visualize their structure in motion directly. In this studies, we aim to capture the short-lived productive Michaelis complex structure during the reaction of glutathione synthetase. To accomplish this, we used a transition-state analogue inhibitor (TSA) which is subjected to enzyme-catalyzed phosphorylation by ATP within the enzyme active site as a substrate of enzyme. We thus crystallized the enzyme complexed with this inhibitor and a caged-ATP to prevent the phosphorylation. This system allows to release ATP upon photdlysis to initiate the phosphorylation of the inhibitor within the enzyme active site. We used white beam Laue diffraction method or conventional monochromatic methods with flash cooling. We planed to use the monochromatic methods to compensate the results of Laue methods since the Laue diffraction has two disadvantages, low completeness of the low resolution data and high X-ray damage with crystals. We succeed to measure very good Laue diffraction data at the beamline ID9 at European Synchrotron Radiation Facility (ESRF). We also archived to install the computer program developed at ESRF to handle the Laue diffraction in our laboratory at Institute for Chemical Research, Kyoto University. The results showed that we have captured the structure of TSA unphosphorylated at immediately after photolysis. We also determine time-resolved movies during the TSA is being phosphorylated with ATP at the enzyme active site.

Report

(2 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] 加藤 博章: "酵素の四次元構造-時分割X線結晶構造解析で反応途中の酵素を見る" バイオサイエンスとインダストリー. 55(7). 482-484 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 加藤 博章: "ラウエ法を用いたダルタチオン合成酵素の時分割X線結晶構造解析" News Letter(重点領域研究:動的蛋白質結晶解析). 4(1). 76-76 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 中津 亨: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Biol.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II." Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Soichi Wakatsuki: "ID14‘Quadriga',a Beamline for Protein Crystallography at the ESRF" J.Synchrotron Rad.(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Hiroaki Kato: "Four-dimentional structure of enzyme : Watching enzyme at work by time-resolved X-ray crystallography" Bioscience & Industory. 55(7). 482-484 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Hiroaki Kato: "Time-resolved Crystallography of Glutathione SYnthetase by Laue Diffraction" News Letter (Grant-in-Aid for Scientific Research on Priority Areas : Dynamic Protein Crystallography). 4(1). 76-76 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Toru Nakatsu: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Biol.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II." Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Soichi Wakatsuki: "ID14'Quadriga', a Beamline for Protein Crystallography at the ESRF" J.Synchrotron Rad.(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 加藤 博章: "酵素の四次元構造-時分割X線結晶解析で反応途中の酵素を見る" バイオサイエンスとインダストリー. 55(7). 32-34 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 加藤 博章: "ラウエ法を用いたグルタチオン合成酵素の時分割X線結晶構造解析" News Letter(重点領域研究:動的蛋白結晶解析). 4(1). 76-76 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 中津 亨: "Crystal structure of asparagine synthetase reveals a close evolutionary relationship to close II aminoacyl-tRNA synthetase" Nature Struct.Biol.5(1). 15-19 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 山下 敦子: "Crystallization and preliminary X-ray study of tropinone reductase II" Acta Crystallogr.D. (in press).

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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