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Structural Analysis of Dymamics of Celluar Motors

Research Project

Project/Area Number 09279103
Research Category

Grant-in-Aid for Scientific Research on Priority Areas (A)

Allocation TypeSingle-year Grants
Research InstitutionThe University of Tokyo

Principal Investigator

SUTOH Kazuo  Graduate School of Arts and Sciences, The University of Tokyo, Professor, 大学院・総合文化研究科, 教授 (20111453)

Co-Investigator(Kenkyū-buntansha) WAKABAYASHI Takeyuki  Graduate School of Science, The University of Tokyo, Professor, 大学院・理学系研究科, 教授 (90011717)
WAKABAYASHI Katsuzo  Osaka University, Graduate School of Engineering Science, Professor, 大学院・基礎工学研究科, 教授 (00029521)
SHIRAKIHARA Yasuo  National Institute of Genetics, Associate Professor, 構造遺伝学研究センター, 助教授 (20150287)
Project Period (FY) 1997 – 2000
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥213,200,000 (Direct Cost: ¥213,200,000)
Fiscal Year 2000: ¥34,800,000 (Direct Cost: ¥34,800,000)
Fiscal Year 1999: ¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 1998: ¥74,600,000 (Direct Cost: ¥74,600,000)
Fiscal Year 1997: ¥73,800,000 (Direct Cost: ¥73,800,000)
KeywordsMyosin / Dynein / Kinesin / FRET / X-ray scattering / Electron microscopy / Recombinant motors / X-ray crystallography / 分子モーター / 核酸モーター
Research Abstract

Based on crystal structures of the motor domain of Dictyostelium myosin II, we carried out of the structure-function analysis of this motor domain. We constructed many types of Dictyostelium myosin II mutants, which were trapped at a specific step of ATP hydrolysis cycle. Biochemical and biophysical studies on these mutants have shown how the three-dimensional structure of the motor domain rearranges at each step of ATP hydrolysis cycle, and how these changes are finally transmitted to the actin-binding site and the converter domain to generate sliding and force generation on an actin filament. Furthermore, we carried out the GFP-based FRET measurements of the fusion protein consisting of GFP, the motor domain and BFP. These FRET measurements have shown that the converter domain really swings at the isomerization step first and then swings back at the Pi release step. The latter step is likely to correspond to the stroke step. We have then constructed a prism-based total reflection fluorescence microscope that can visualize fluorescence spectra of many single molecules in a microscope filed at the same time at the video rate. By using this novel technique, we have detected that the converter of myosin motor domain is trapped in a particular orientation in the presence of various types of nucleotide analogs such as MgADP.Vi, MgADP.BeFx and MgADP.AlFx, consistent with the ensemble measurements mentioned above.

Report

(5 results)
  • 2001 Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] Yasunaga, T., Sutoh, K., et al.: "ATP-induced transconformation of myosin revealed by determining three-dimensional positions of fluorophores from fluorescence energy transfer measurements"J.Structural Biology. 132. 6-18 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sasaki, N., Sutoh, K., et al.: "Deletion of the Myopathy Loop of Dictyostelium Myosin II and Its Impact on Motor Functions"J.Biol.Chem.. 274. 37840-37844 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suzuki, Y., Sutoh, K., et al.: "Swing of leve-arm of myosin motor at the isomerization and Pi-release steps"Nature. 396. 380-383 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Samatey, F., Shirakihara, Y., et al.: "Crystallization of the F41 fragment of Flagellin and data collection from extremely thin crystals"Journal of Structural Biology. 132. 106-111 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maruta, S., Wakabayashi, K., et al.: "Solution structure of myosin-ADP-MgFn ternary complex by fluorescent probes and small-angle X-ray scattering"J.Biochem.. 128. 687-694 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Wakabayashi, T., et al.: "Structure and Function of Actin Filaments revealed by Site-Directed Mutagenesis of Actin and Image Analysis of Cryo-electron Micrographs"Proceeding of the 22^<nd> Taniguchi International symposium of Biophysics. 253-263 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 22 Yasunaga, T., Sutoh, K., et al.: "ATP-induced transconformation of myosin revealed by determining three-dimensional positions of fluorophores from fluorescence energy transfer measurements"J. Structural Biology. 132. 6-18 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sasaki, N., Sutoh, K., et al.: "Deletion of the Myopathy Loop of Dictyostelium Myosin II and Its Impact on Motor Functions"J. Biol. Chem.. 274. 37840-37844 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suzuki, Y., Sutoh, K., et al.: "Swing of leve-arm of myosin motor at the isomerization and Pi-release steps"Nature. 396. 380-383 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Samatey, F., Shirakihara, Y., et al.: "Crystallization of the F41 fragment of Flagellin and data collection from extremely thin crystals"Journal of Structural Biology. 132. 106-111 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maruta, S., Wakabayashi, K., et al.: "Solution structure of myosin-ADP-MgFn ternary complex by fluorescent probes and small-angle X-ray scattering"J. Biochem.. 128. 687-694 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Wakabayashi, T., et al.: "Structure and Function of Actin Filaments revealed by Site-Directed Mutagenesis of Actin and Image Analysis of Cryo-electron Micrographs"Proceeding of the ^<nd> Taniguchi International symposium of Biophysics. 253-263 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sutoh,K., et al.: "ATP-induced trnasconformation of myosin revealed by determining three-dimensional positions of fluorophores from fluorescence energy transfer measurements."J.Structural Biology. 132. 6-18 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sutoh,K., et al.: "Insertion or deletion of a single residue in the strut sequence of Dictyostelium Myosin II abolishes strong-binding to actin."J.Biol.Chem.. 275. 38705-38709 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sutoh,K., et al.: "Novel Dictyostelium unconventional myosin, MyoM, has a putative RhoGEF domain."FEBS Letters. 474. 16-22 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Wakabayashi,K., et al.: "Neutron fiber diffraction of frog muscle with the contrast variation."J.Phys.Soc.Japan.Suppl.. 70. (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Wakabayashi,K., et al.: "Intensity changes of the first layer-line complex in the X-ray pattern of a frog skeletal muscle during isometric contraction : The intensity of the actin-based layer line decreases."J.Muscle Res.Cell Motil.. 21. 197 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Shirakihara,Y., et al.: "Crystallization of the F41 fragment of Flagellin and data collection from extremely thin crystals."Journal of Structural Biology. 132. 106-111 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sasaki, N., Asukagawa, H., Sutoh, K., et al.: "Deletion of the Myopathy Loop of Dictyostelium Myosin II and Its Impact on Motor Functions"Journal of Biological Chemistry. 274. 37840-37844 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yazu, M., Adachi, H. and Sutoh, K.: "Novel uncenvetional myosin MyoK is a class I myosin with the longest loop-1 insert and the shortest tail"Biochemical and Biophysical Research Communicaions. 255. 711-716 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Suzuki, Y., Yasunaga, T., Sutoh, K., et al.: "Swing of lever-arm of myosin motor at the isomerization and Pi-release steps"Nature. 396. 380-383 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S. Maruta, Y. Uehara, K. Wakabayashi, et al.: "Formation of the Myosin・ADP・Gallium Fluoride complex and Its Solution structure by Small-Angle Synchrotoron X-Ray Scattering"The Journal of Biochemistry. 125. 177-185 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Takezawa, D-S. Kim, K. Wakabayashi, et al.: "Backward movements of Cross-Bridges by Application of Stretch and by Binding of MgADP to Skeletal Muscle Fibers in the Rigor State as Studied by X-Ray Diffraction"Biophysical Jounal. 76. 1770-1783 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K. Wakabayashi and N. Yagi: "Muscle Contraction : Challenges for Synchrotron Radiation"Journal of Synchrotron Radiation. 6. 875-890 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Suzuki,Y.,Yasunaga,T.,Sutoh,K.et al: "Swing of lever-arm of myosin motor at the isomerization and Pi-release steps." Nature. 396. 380-383 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sasaki,N.and Sutoh,K.: "Structure-Mutation Analysis of the ATPase Site of Dictyostelium discoideum Myosin II." Advances in Biophsics. 35. 1-24 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nagasaki,A.,Adachi,H.,and Sutoh K.: "Mutational analysis of the switch II loop of Dictyostelium myosin II." Journal of Biological Chemistry. 273. 20334-20340 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sasaki,N.,Shimada,T.,and Sutoh,K.: "A novel Dictyostelium discoideum gene required for cAMP-dependent cell aggregation." Biochmical and Biophysical Research Communications. 244. 505-513 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Shirakihara,Y.,Kambara,M.,et al: "X-ray crystal analysis of nucleotide bound form of a3b3-complex of F1-ATPase." Photon Factory Activity Report. 15,26. (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kim,D.S.,Takezawa,Y.,Wakabayashi,K.,et al: "X-ray diffraction studies on the structural changes of rigor muscles induced by binding of phosphate analogs in the presence of MgADP" Biophysical Chemistry. 74. 71-82 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Adachi,H., Sutoh,K., et al.: "Dictyostelium IQ-GAP-related protein specifically involved in the completion of cytokinesis." J.Cell Biol.137. 891-898 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Bobkov,A.A., Sutoh,K., et al.: "Nucleotide and actin binding properties of the isolated motor domain from Dictyostelium discoideum myosin." J.Muscel Res.Cell Motil.18. 563-571 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Shimada,T., Sutoh,K., et al.: "Alanine scanning mutagenesis of swith I region of the ATPase site of Dictyostelium discoideum myosin II." Biochemistry. 36. 14037-14043 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Fujita,H., Sutoh,K., et al.: "Characterization of mutant myosine equivalent to human familial hypertophic cardiomyopathy mutants." J.Clinc.Invest.99. 1010-1015 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Suzuki,Y., Sutoh,K., et al.: "Modulation of actin filament sliding by mutations of the SH2 cysteine in Dictyostelium myosin II." Biochem.Biophys.Res.Commun.234. 701-706 (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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