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Studies on translation mechanisms of plastid mRNAs

Research Project

Project/Area Number 09304074
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 植物生理
Research InstitutionNagoya University

Principal Investigator

SUGIURA Masahiro  Nagoya University, Center for Gene Research, Professor, 遺伝子実験施設, 教授 (80027044)

Co-Investigator(Kenkyū-buntansha) HIROSE Tetsuro  Nagoya University, Center for Gene Research, Assistant Professor, 遺伝子実験施設, 助手 (30273220)
SUGITA Mamoru  Nagoya University, Graduate School of Human Informatics, Professor, 人間情報学研究所, 教授 (70154474)
Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥33,100,000 (Direct Cost: ¥33,100,000)
Fiscal Year 1999: ¥8,000,000 (Direct Cost: ¥8,000,000)
Fiscal Year 1998: ¥7,600,000 (Direct Cost: ¥7,600,000)
Fiscal Year 1997: ¥17,500,000 (Direct Cost: ¥17,500,000)
Keywordstobacco / chloroplast / translation / RNA editing / initiation codon / cistron / in vitro / mRNA / 高等植物 / クロレラ / プラスチド
Research Abstract

We found following molecular mechanisms of translation in chloroplasts using in vitro systems from isolated tobacco chloroplasts.
(1) Determination of initiation codons.
The tobacco chloroplast ndhD mRNA has three possible intiation codons. We determined the AUG triplet created from ACG by RNA editing the initiation codon. Then, GUG was found to be the initiation codon of psbC mRNA which has AUG and GUG triplets in-frame.
(2) Efficiency of initiation codons
The efficiency of translation was determined to be in the order of AUG, GUG and UUG.
(3) Translation of dicistronic mRNAs
The psaC-ndhD mRNA was found not to be translated but did after intercistronic cleavage. On the other hand, the psbD-psbC mRNA was translated as it is.
(4) Effect of the Shine-Dalgarno (SD) sequence
The SD sequence was found to be functional only when this is located 5-12 nucleotide upstream from AUG.
(5) Relationship between RNA editing and translation
We have succeeded in developing an in vitro RNA editing system from isolated tobacco chloroplasts, and proved that the edited AUG functions as an initiation codon.

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Sanjay Kapoor: "Identification of two essential sequence elements in the nonconsensus typeII PatpB-290 plastic promoter by using plastid transcription extracts from cultured tobacco BY-2cells"Plant Cell. 11. 1799-1810 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tetsuro Hirose: "RNA editing sites in tobacco chloroplast transcripts : editing as a possible vegulator of chloroplast RNA polymerase activity"Mol. Gen. Genet. 262. 462-467 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tetsuro Hirose: "The chloroplast InfA gene with a functional UUA initiation codon"FEBS Lett.. 445. 169-172 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Michinori Mutsuda: "Physiological characterization of RNA-binding protein deficient cells from synechaococcus sp. strain PCC 7942"Plant Cell Physiol.. 40. 1203-1209 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Chieko Sugita: "Targeted deletion of genes for eukaryotic RNA-binding proteins, Rbpland Rbp2, in cyanobacterium synechococcus sp. strain PCC 7942 : Rbp1 is indispensable for cell growth at cold temperatures"FEMS Microbiol. Lett.. 176. 155-161 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takahiro Nakamura: "Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor +RNAs"FEBS Lett.. 460. 437-441 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 杉浦昌弘: "葉緑体ゲノムの分子遺伝学"遺伝. 53・4. 61-65 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 杉田護: "葉緑体遺伝子発現における転写後調節"蛋白質核酸酵素. 45・2. 132-138 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masahiro Sugiura: "The Phototrophic Prokaryotes"Kluwer Academic/Plenum Publishers. 836 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masahiro Sugiura: "From Symbiosis to Eukaryotism-Endocytobiology VII"Univ. Geneva Press. 印刷中 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirose, T., M Sugiura: "Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD and mRNA : a possible regulatory mechanism for expression of a chloroplast operon consisting of functionally unrelated genes."EMBO J.. 16. 6804-6811 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyagi, T., S. Kapoor, M. Sugita and M. Sugiura: "Transcript analysis of tobacco plastid rps2/atpI/H/F/A operon reveals the existence of a non-consensus type(NCII) promoter upstream to atpI coding sequence"Mol. Gen. Genet.. 257. 299-307 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirose, T., T. Kusumegi and M. Sugiura: "Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5'-untranslated region but not on internal RNA editing in the coding region"FEBS Lett.. 430. 257-260 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sugiura, M., T. Hirose and M. Sugita: "Evolution and mechanism of translation in chloroplasts"Annu. Rev. Genetics. 32. 437-459 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Wakasugi, T., M. Sugita, T. Tsudzuki and M. Sugiura: "Updated gene map of tobacco chloroplast DNA"Plant Mol. Biol. Rep.. 16. 231-241 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirose, T., T. Ideue, T. Wakasugi and M. Sugiura: "The chloroplast infA gene with a functional UUA initiation codon"FEBS Lett.. 445. 169-172 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kapoor, S. and M. Sugiura: "Identification of two essential sequence elements in the nonconcensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells"Plant Cell. 11. 1799-1810 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Nakamura, T., M. Ohta, M. Sugiura and M. Sugita: "Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs"FEBs Lett. 460. 137-441 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirose, T., T. Kusumegi, T. Tsudzuki and M. Sugiura: "RNA editing sites in tobacco chloroplast transcripts : editing as a possible regulator of chloroplast RNA polymerase activity"Mol. Gen. Genet. 262. 462-467 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sanjay Kapoor: "Identification of two essential sequence elements in the nonconsensus typeII PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells."Plant Cell. 11. 1799-1810 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tetsuro Hirose: "RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity."Mol.Gen.Genet. 262. 462-467 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tetsuro Hirose: "The chloroplast InfA gene with a functional UUA initiation codon."FEBS Lett.. 445. 169-172 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Michinori Mutsuda: "Physiological characterization of RNA-binding protein deficient cells from synechococcus sp. strain PCC 7942."Plant Cell Physiol.. 40. 1203-1209 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Chieko Sugita: "Targeted deletion of genes for eukaryotic RNA-binding Proteins,Rbp1 and Rbp2,in cyanobacterium synechococcus sp. strain PCC 7942: Rbp1 is indispensable for cell growth at cold temperatures."FEMS Microbiol.Lett.. 176. 155-161 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takahiro Nakamura: "Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs."FEBS Lett.. 460. 437-441 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Masahiro Sugiura: "The Phototrophic Prokaryotes"Kluwer Academic/Plenum Publishers. 836 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Masahiro Sugiura: "From Symbiosis to Eukaryotism-Endocytobiology VII"Univ Geneva Press(印刷中). (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Watanabe,T.,M.Sugita,M.Sugiura: "Identification of 10Sa RNA(tmRNA)homologues from the cyanobacterium Synechococcus sp.strain PCC6301 and related organisms." Biochim.Biophy.Acta. 1396. 97-104 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Miyagi,T.,S.Kapoor,M.Sugita and M.Sugiura: "Transcript analysis of tobacco plastid rps2/atnI/H/F/A operon reveals the existen-ce of a non-consensus type(NCII)promoter upstream to atpI coding sequence." Mol.Gen.Genet.257. 299-307 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Akama,K.,Y.Yukawa,M.Sugiura and I.Small: "Plant cytosolic tRNA^<H15> possesses an exceptional C_<54> in the canonical TΨC loop." Nucl.Acids.Res.26. 2708-2714 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Hirose,T.,T.Kusumegi and M.Sugiura: "Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5'-untranslated region but not on internal RNA editing in the coding region." FEBS Lett.430. 257-260 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiura,M.,T.Hirose and M.Sugita: "Evolution and mechanism of translation in chloroplasts." Annu.Rev.Genetics. 32. 437-459 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiura,M.: "From plastid to cyanobacterial genomes." In The Phototrophic Prokaryotes. (印刷中). (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiura,M.: "The discovery of the complete sequence of tobacco and rice chloroplast genomes.In Discoveries in Plant Biology" World Scientific Publishing Co.Ltd.,Hong Kong, 45-60 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiura,M.: "Phytogene sequence:From cyanobacteia to plastids.In From Symbiosis to Eukaryotism-Endocytobiology VII" Univ Geneva Press,in press(印刷中), (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Sugiura: "Plant in vitro transcription systems." Annu.Rev.Plant Physiol.Plant Mol.Biol.48. 383-398 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.Kappor, J.Y.Suzuki and M.Sugiura: "Identification and functional significance of a new class of non-consensus-type plastid promoters." Plant J.11. 327-337 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Moriguchi, M.Sugita and M.Sugiura: "Structure and subcellular localization of a small RNA-binding protein from tobacco." Plant J.12. 215-221 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Wakasugi, M.Kapoor, M.Sugita, K.Yoshinaga and M.Sugiura: "Complete sequencing of the chloroplast genome of the green alga Chlorella vulgaris reveals the existence of genes possibly involved in chloroplast division." Proc.Natl. Acad.Sci.USA. 94. 5967-5972 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Yukawa, M.Sugita and M.Sugiura: "Efficient in vitro transcription of plant nuclear tRNA^<Ser> genes in a nuclear extract from tobacco cultured cells." Plant J.12. 965-970 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Hirose and M.Sugiura: "Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA : a possible regulatory mechanism for expression of a chloroplast operon consisting of functionally unrelated genes." EMBO J.16. 6804-6811 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.Kapoor and M.Sugiura: "Expression and regulation of plastid genes. In “Photosynthesis : A Comprehensive Treatise"" Cambridge Univ.Press,U.K., 72-86 (1998)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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