• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Studies of biological function and relationship between structure and function of major-type sigma factors

Research Project

Project/Area Number 09460046
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionThe University of Tokyo

Principal Investigator

TAKAHASHI Hideo  Institute of Molecular and Cellular Biosciences, The University of Tokyo, Professor, 分子細胞生物学研究所, 教授 (90013333)

Co-Investigator(Kenkyū-buntansha) TANAKA Kan  Institute of Molecular and Cellular Biosciences, The University of Tokyo, Associate Professor, 分子細胞生物学研究所, 助教授 (60222113)
Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥12,200,000 (Direct Cost: ¥12,200,000)
Fiscal Year 1999: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 1998: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 1997: ¥6,000,000 (Direct Cost: ¥6,000,000)
Keywordsprincipal-type sigma factors / stationary phase / σィイD138ィエD1 / Escherichia coli / cyanobacterium / Arabidopsis thaliana / plastid / red algae / 定常期シグマ因子 / 葉緑体 / ホロ酵素 / rpoS / katE / sig遺伝子
Research Abstract

1. Using rpoS-deficient (rpoS:: Tn10) strains, an rpoS-dependent katE promoter was delimited in a region different from that previously reported by others. Furthermore, in the promoter region a -10 consensus hexamer sequence was found, but ?35 sequence was not. A carboxy-terminal region responsible for the σ ィイD138ィエD1-speeific salt-tolerance was identified by in vitro transcription experiments and named CTE (carboxy-terminal element). 2. Group 2 sigma factors of cyanobacterium Synechococcus sp. JPCC7942 were shown to recognize E. coli canonical promoters as well as cyanobacterial common promoters by in vitro, experiments. A proteome analysis, of Synechocystis sp. PCC6803 was performed and it was suggested that sigD and sigE genes were involved in the induction of specific genes during nitrogen-deficient growth condition. 3. Multiple nuclear genes (sig) encoding plastid RNA polymerase sigma factors were identified from red algae, Cyanidium caladium RK-1 and higher plants including Arabidopsis thaliana, tobacco and rice. Structural and functional analyses of these genes were carried out. The overexpressed and purified gene products were shown to have sigma activity in vitro. For A. thaliana, three new sig genes, named sigD, sigE, and sigE, besides sigA, sigB and sigC, were identified and chromosomal locations of these genes were determined. Furthermore, using uid and GFP gene fusion and transformation into Arabidopsis plants, light inducibility, localization of gene products and spacial and temporal expression of these genes during plastid development were analyzed.

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Y. Sugimoto et al.: "The rpoD1 gene of Synechococcus sp. Strain PCC7924 encodes the principal sigma factor of RNA polymerase"J. Geu. Appl. Microbiol. 43. 17-21 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Tauaka et al.: "Identification and analysis of the rpoSdepndent promoter of katE, encoding catalase HPII in Eschenchia coli."Biochim Biophys Acta. 1352. 161-166 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Shiba et al.: "Inroganic polyphosphate and the induction of rpoSexpression"Proc. Natl. Acad. Sci.. 94. 11210-11215 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Tanaka et al.: "Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana"FEBS Letters. 413. 309-313 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Tozawa et al.: "Nuclear encoding of aplastid sigmafactorin rice and its tissue and light dependent expression"Nucleic Acids Res.. 15. 415-419 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Oikawa et al.: "Two types of differentiaty photo-regulated nudear genes that encodes factors forchloro plast RNA polymerase in the red alga Cyanidium Caldarium strain RK-1."Gene. 210. 277-285 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Goto-Seki et al.: "Specificity cross talk amon group 1 and group 2 sigma factors in the cyanobacterium Synechoococous sp. PCC7942"Mol Microbiol.. 34. 473-484 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] "Plastidic RNA polymerase factors in Arabidopsis"Plant Cell Physoil.. 40. 832-843 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sugimoto. Y., K. Tanaka, S. Masuda and H. Takahashi: "The rpoD1 gene of Synechococcus sp. Strain PCC7942 encodes the principal sigma factor of RNA polymerase"J. Gen. Appl. Microbiol.. 43. 17-21 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tanaka, K., K. Handel, P.C. Lowen, and H. Takahashi: "Identification and analysis of the rpoS-dependent promoter of katE, encoding catalase HPII in Escherichia coli."Biochim. Biophys. Acta. 1352. 161-166 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shiba, T., K. Tsutsumi, H. Yano, Y. Ihaia, A. Kameda, K. Tanaka, H. Takahashi, M. Munekata, N. N. Rao, and A. Kornberg: "Inorganic polyphosphate and the induction of rpoS expression"Proc. Natl. Acad. Sci. USA. 94. 11210-11215 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tanaka, K., Y. Tozawa, N. Mochizuki, K. Shinozaki, A. Nagatani, K. Wakasa, and H. Takahashi: "Characterization of three cDNA, species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana : Evidence for the sigma factor heterogeneity in higher plant plastids."FEBS Lett.. 413. 309-313 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tozawa, Y., K. Wakasa, K. Tanaka, and H. Takahashi: "Nuclear encoding of a plastid sigma factor in rice and its tissue-and light-dependent expression"Nucleic Acids Res.. 15. 415-419 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Oikawa, K., Tanaka, K., H. Takahashi: "Two types of differentially photo-regulated nuclear genes that encode s factors for chloroplast RNA polymerase in the red alga Cyanidium caldarium strain RK-1."Gene. 210. 277-285 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takahashi, H.: "Transcriptional Control in Higher Plant Plastids (in Japanese)"Chemical Regulation in Plants (Shokubutsuno Kagaku Tyousetsu). 33. 169-181 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Goto-Seki, M. Shirokane, S. Masuda, K. Tanaka and H. Takahashi: "Specificity crosstalk among group 1 and a phylogenetic analysis"Mol. Microbiol.. 34. 473-484 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Kanamaru, M. Fujiwara, M. Seki, T. Katagiri, M. Nakamura, N. Mochizuki, A. Nagatani, K. Shinozaki, K. Tanaka and H. Takahashi: "Plastidic RNA polymerase σ factors in Arabidopsis"Plant Cell Physiol.. 40. 832-842 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Goto-Seki et al.: "Specificity crosstak among group 1 and group 2 sigma factors in the cyanobacterium Synodococcus PCC7942"Mol. Microbiol.. 34. 473-484 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K. Kanamaru et al.: "Plastidic RNA polymerase σ factors in Arabidopsis thaliana"Plant Cell Physiol.. 40. 832-842 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tozawa, Y: "Nuclear encoding of a plastid sigma factor in rice and its tissde-and light-dependent expression" Nucleic Arids Res. 15. 415-419 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Oikawa, K.: "Two types of differentially photo-regulsted nuclear genes that encede sigma factors for clles oplast" Gene. 210. 277-285 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 高橋秀夫: "高等植物プラスチドにおける転写制御" 植物の化学調節. 33. 169-181 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Sugimoto: "The rpoD1 gene of synechococcus sp.PCC7942 encodes the principal sigma factor of RNA polymerase" J.Geu.Appl.Microbiol.43. 17-21 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Tanaka: "Identification and analysis of the rpoS-dependent promoter of katE encoding HPTL in Escherichia cobi" Biochem.Biophys.Acta. 1352. 161-166 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Shiba: "Inorganic pdyphosphate and the induction of rpoS expression" Proc.Natl.Acad.Sci.USA. 94. 11210-11215 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Tanaka: "Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliaua." FEBS Lett.413. 309-313 (1997)

    • Related Report
      1997 Annual Research Report

URL: 

Published: 1997-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi