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Mechanisms of Catalytic Function of Prenyl Chain Elongating Enzymes

Research Project

Project/Area Number 09480138
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioorganic chemistry
Research InstitutionTohoku University

Principal Investigator

KOYAMA Tanetoshi  Tohoku University, Institute for Chemical Reaction Science, Professor, 反応化学研究所, 教授 (20089808)

Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥12,600,000 (Direct Cost: ¥12,600,000)
Fiscal Year 1998: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 1997: ¥9,200,000 (Direct Cost: ¥9,200,000)
Keywordsprenyltransferase / prenyl chain elongation / isoprenoid biosynthesis / farnesyl diphosphate / polyprenol / undecaprenyl diphosphate / heterosubunit / gene cloning / プレニルトランスフェラーゼ / ファルネシル二リン酸 / ウンデカプレニル二リン酸 / イソプレン鎖延長 / プレニル二リン酸
Research Abstract

1) Molecular Cloning of Undecaprenyl Diphosphate Synthase Gene and Identification of Conserved Sequences for Z-Prenyl Chain Elongating Enzymes
Cloning of the gene for undecaprenyl diphosphate synthase (UPS) was carried out by developing a novel screening method to detect colonies overexpressing extra prenyltransferases in Escherichia coli cells by autoradiography, providing the first primary structure for any prenyltransferases that catalyze Z-prenyl chain elongation. The deduced primary structure of the UPS is totally different from those of E-prenyl chain elongating enzymes which have characteristic conserved regions including aspartate-rich motifs. Construction of the gene expression system which enabled overproduction of the UPS in E.coil cells was successful. Purification and crystallization of the UPS was carried out.
2) Elucidation of the Function-Expressing Mechanisms of Heptaprenyl Diphosphate Synthase
Heptaprenyl diphosphate synthase (HepPS) of Bacillus subtilis is composed of t … More wo dissociable subunits, componentsand I -II, both of which are required for the catalytic function. The dynamic interaction in forming a catalytically active complex was investigated by gel filtration and immunoblotting analysis. The mechanism of this heteromeric enzyme is understood by assuming that association and dissociation of the two subunits facilitate turnover of catalysis for the synthesis of the amphipathic water-insoluble product from soluble substrates. Photoaffinity labelling experiments by use of a benzoylphenoxy analog of the allylic substrate, farnesyl diphosphate (FPP) indicated that component I participates in binding of FPP through the hydrophobic prenyl tail and that the two components with the allylic substrate form a stable ternary complex.
3) Identification of Active Sites of Prenyltransferases by Genetic Engineering Introduction of many kinds of mutations in the structural genes of FPP synthase of Bacillus stearothermophilus, HepPP synthase of B.subtilis and UPS of M.Iuteus B-P 26 was carried out to find amino acid residues that were important for the
catalyticfunction or substrate binding. Less

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (62 results)

All Other

All Publications (62 results)

  • [Publications] Y.-W.Zhang: "Two Cistrons of the gerC Operon of Bacillus subtilis Encode the Two Subunits of Heptaprenyl Diphoshate Synthase" J.Bacteriol.179・4. 1417-1419 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Koike-Takeshita: "Identification of a Novel Gene Cluster Participatine in Menaouinone (Vitamin K_2) Biosynthesis. Cloning and sequence determination of the 2-heptaprenyl-1, 4-naphthoquinone methyltransferase gene of Bacillus stearothermophilus" J.Biol.Chem.272・19. 12380-12383 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Nagaki: "An Artificial Substrate for the Thermostable Farnesyl Diphosphate Synthase from Bacillus stearothermophilus" Chem.Lett.497-498 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee: "Isopentenyl Diphosphate Isomerase and Prenyltransferase Activities in Bottom Fraction and C-Serum from Hevea Latex" Phytochemistry. 45・2. 261-267 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee: "Rubber Formation by Fresh Bottom Fraction of Hevea Latex" Phytochemistry. 45・2. 269-274 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee: "Structure of in vitro Synthesized Rubber from Fresh Bottom Fraction of Hevea Latex" Phytochemistry. 45・2. 275-281 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Ohya: "Isopentenyl Pyrophosphate Isomerase Activity in Lactarius Mashrooms" Phytochemistry. 45・6. 1115-1118 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] D.M.Marecak: "Benzoylphenoxy Analogs of Isoprenoid Diphosphates as Photoactivatable Substrates for Bacterial Prenyltransferases" Bioorg.Med.Chem.Lett.7・15. 1973-1978 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura: "Enzymatic Aspects of Isoprenoid Chain Elongation" Chem.Rev.98・4. 1263-1276 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Shimizu: "Molecular Cloning, Expression, and Characterization of the Genes Encoding the Two Essential Protein Components of Micrococcus luteus B-P 26 Hexaprenyl Diphosphate Synthase" J.Bacteriol.180・6. 1578-1581 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Shimizu: "Molecular Cloning, Expression and Purification of Undecaprenyl Diphosphate Synthase : No sequence similarity between E-and Z-prenyl diphosphate synthases" J.Biol.Chem.273・31. 19476-19481 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Koike-Takeshita: "Intersubunit Structure within the Heterodimers of Medium-Chain Prenyl Diphosphate Synthases. Formation of a hybrid-type heptaprenyl diphosphate synthase." J.Biochem.124・2. 790-797 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Y.-W.Zhang: "Two Subunits of Heptaprenyl Diphosphate Synthase of Bacillus subtilis Form a Catalytically Active Complex" Biochemistry. 37・38. 13411-13420 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Nagaki: "Substrate Specificity of Thermostable Farnesyl Diphosphate Synthase with Alkyl Group Homologs of Isopentenyl Diphosphate" Bioorg.Med.Chem.Lett.8・18. 2549-2554 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 古山種俊: "ポリプレニルニリン酸合成酵素の構造と機能-はじめて明らかにされたZ型プレニル鎖延長酵素の構造-" 生物工学会誌. 76・10. 422-426 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Ohnuma: "Recognition of Allylic Substrates in Sulfolobus acidocaldarius Geranylgeranyl Diphosphate Synthase : Analysis Using Mutated Enzymes and Artificial Allylic Substrates" J.Biochem.123・6. 1036-1040 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura: "Mechanistic Enzymology and Molecular Genetics of Chain Elongation in Isoprenoid Biosynthesis, Dynamic Aspects of Natural Products Chemistry" Kodansha, K.Ogura and U.Sankawa ed., 1-23 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura: "Polyprenyl Diphosphate Synthases, Subcellular Biochemistry, Vol.28, Choresterol : Its Functions and Metabolism in Biology and Medicine" Plenum Publishing Company, J.R.Harris ed., 57-87 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Koyama: "Isopentenyl Diphosphate Isomerase and Prenylransferases, Comprehensive Natural Product Chemistry, Vol.2" Elsevier Science Ltd., Oxford, D.Barton and K.Nakanishi ed., 69-96 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Koyama: "Structure and Function of Polyisoprenoid Chain Elongation Enzymes Biochemical Principles and Mechanisms of Biosynthesis and Biodegradation of Polymers" Wiley-VCH,A.Steinbuchel ed., 308-315 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Y.-W.Zhang, T.Koyama, and K.Ogura: "Two Cistrons of the gerC Operon of Bacillus subtilis Encode the Two Subunits of Heptaprenyl Diphosphate Synthase" J.Bacteriol.179 (4). 1417-1419 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Koike-Takeshita, T.Koyama, and K.Ogura: "Identification of a Novel Gene Cluster Participating in Menaquinone (Vitamin K_2) Biosynthesis. Cloning and sequence determination of the 2-heptaprenyl-1,4-naphtho-quinone methyltransferase gene of Bacillus stearothermophilus" J.Biol.Chem.272 (19). 12380-12383 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Nagaki, T.Koyama, T.Nishino, K.Shimizu, Y.Maki, and K.Ogura: "An Artificial Substrate for the Thermostable Farnesyl Diphosphate Synthase from Bacillus stearothermophilus" Chem.Lett.497-498 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee, Y.Tanaka, K,Ogura, T.Koyama, R.Wititsuwannakul, D.Wititsuwannakul and K.Asawatreratanakul: "Isopentenyl Diphosphate Isomerase and Prenyltransferase Activities in Bottom Fraction and C-Serum from Hevea Latex" Phytochemistry. 45 (2). 261-267 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee, Y.Tanaka, K,Ogura, T.Koyama, R.Wititsuwannakul, and D.Wititsuwannakul: "Isopentenyl Diphosphate Isomerase and Prenyltransferase Activities in Bottom Fraction and C-Serum from Hevea Latex" Phytochemistry. 45 (2). 269-274 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] J.Tangpakdee, Y.Tanaka, K,Ogura, T.Koyama, R.Wititsuwannakul and N.Chareonthiphakorn: "Structure of in vitro Synthesized Rubber from Fresh Bottom Fraction of Hevea Latex" Phytochemistry. 45 (2). 275-281 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Ohya, Y.Tanaka, K.Ogura, and T.Koyama: "Isopentenyl Pyrophosphate Isomerase Activity in Lactarius Mashrooms" Phytochemistry. 45 (6). 1115-1118 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] D.M.Marecak, Y.Horiuchi, H.Arai, M.Shimonaga, Y.Maki, T.Koyama, K.Ogura and G.D.Prestwich: "Benzoylphenoxy Analogs of Isoprenoid Diphosphates as Photoactivatable Substrates for Bacterial Prenyltransferases" Bioorg.Med.Chem.Lett.7 (15). 1973-1978 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Shimizu, T.Koyama, and K.Ogura: "Molecular Cloning, Expression, and Characterization of the Genes Encoding the Two Essential Protein Components of Micrococcusluteus B-P 26 Hexaprenyl Diphosphate Synthase." J.Bacteriol.180 (6). 1578-1581 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Ohnuma, H.Hemmi, T.Koyama, K.Ogura, and T.Nishino: "Recognition of Allylic Substrates in Sulfolobus acido-caldarius Geranylgeranyl Diphosphate Synthase : Analysis Using Mutated Enzymes and Artificial Allylic Substrates" J.Biochem.243 (31). 19476-19481 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Shimizu, T.Koyama, and K.Ogura: "Molecular Cloning, Expression and Purification of Undecaprenyl Diphosphate Synthase : No sequence similarity between E- and Z-prenyl diphosphate synthases" J.Biol.Chem.243 (31). 19476-19481 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Koike-Takeshita, T.Koyama, and K.Ogura: "Intersubunit Structure within the Heterodimers of Medium-Chain Prenyl Diphosphate Synthases. Formation of a hybrid-type heptaprenyl diphosphate synthase" J.Biochem.124 (2). 790-797 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Y.-W.Zhang, T.Koyama, D.M.Marecak, G.D.Prestwich, Y.Maki, and K.Ogura: "Two Subunits of Heptaprenyl Diphosphate synthase of Bacillus subtilis Form a Catalytically Active Complex" Biochemistry. 37 (38). 13411-13420 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] M.Nagaki, H.Kannari, J.Ishibashi, Y.Maki, T.Nishino, K.Ogura, and T.Koyama: "Substrate Specificity of Thermostable Farnesyl Diphosphate Synthase with Alkyl Group Homologs of Isopentenyl Diphosphate" Bioorg.Med.Chem.Lett.8 (18). 2549-2554 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura and T.Koyama: "Enzymatic Aspects of Isoprenoid Chain Elongation" Chem.Rev.98 (4). 1263-1276 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 76 (10). 422-426 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Koyama, N.Shimizu, and K.Ogura: "Structure and Function of Polyisoprenoid Chain Elongation Enzymes" Wiley-VCH,A.Steinbuchel ed.308-315 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Koyama and K.Ogura: "Isopentenyl Diphosphate Isomerase and Prenyltransferases" Elsevier Science Ltd., Oxford, D Barton and K.Nakanishi ed.Vol.2. 69-96 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura and T.Koyama: Mechanistic Enzymology and Molecular Genetics of Chain Elongation in Isoprenoid Biosynthesis. "Dynamic Aspects of Natural Products Chemistry", Kodansha, 1-23 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura, T.Koyama, and H.Sagami: Polyprenyl Diphosphate Synthases in "Subcellular Biochemistry, Vol.28, Choresterol : Its Functions and Metabolism in Biology and Medicine". Plenum Publishing Company, J.R.Harris ed., 57-87 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] K.Ogura: "Enzymatic Aspects of Isoprenoid Chain Elongation" Chem.Rev.98・4. 1263-1276 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] N.Shimizu: "Molecular Cloning,Expression,and Characterization of the Genes Encoding the Two Essential Protein Components of Micrococcus luteus B-P 26 Hexaprenyl Diphosphate Synthase" J.Bacteriol.180・6. 1578-1581 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] N.Shimizu: "Molecular Cloning,Expression and Purification of Undecaprenyl Diphosphate Synthase:No sequence similarity between E-and Z-prenyl diphosphate synthases" J.Biol.Chem.273・31. 19476-19481 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Koike-Takeshita: "Intersubunit Structure within the Heterodimers of Medium-Chain Prenyl Diphosphate Synthases.Formation of a hybrid-type heptaprenyl diphosphate synthase" J.Biochem.124・2. 790-797 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.-W.Zhang: "Two Subunits of Heptaprenyl Diphosphate Synthase of Bacillus subtilis Form a Catalytically Active Complex" Biochemistry. 37・38. 13411-13420 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Nagaki: "Substrate Specificity of Thermostable Farnesyl Diphosphate Synthase with Alkyl Group Homologs of Isopentenyl Diphosphate" Bioorg.Med.Chem.Lett.8・18. 2549-2554 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 古山種俊: "ポリプレニル二リン酸合成酵素の構造と機能-はじめて明らかにされたZ型プレニル鎖延長酵素の構造-" 生物工学会誌. 76・10. 422-426 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Ohnuma: "Recognition of Allylic Substrates in Sulfolobus acidocaldarius Geranylgeranyl Diphosphate Synthase:Analysis Using Mutated Enzymes and Artificial Allylic Substrates" J.Biochem.123・6. 1036-1040 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Koyama: "Isopentenyl Diphosphate Isomerase and Prenylransferases,Comprehensive Natural Product Chemistry,Vol.2" Elsevier Science Ltd.,Oxford,D.Barton and K.Nakanishi ed., 69-96 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Koyama: "Structure and Function of Polyisoprenoid Chain Elongation Enzymes Biochemical Principles and Mechanisms of Biosynthesis and Biodegradation of Polymers" Wiley-VCH,A.Steinbuchel ed., 308-315 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.W.Zhang: "Two Cistrons of the gerC Operon of Bacillus subtilis Encode the Two Subunits of Heptaprenyl Diphosphate Synthase" J.Bacteriol.179・4. 1417-1419 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] A.Koike-Takeshita: "Identification of a Novel Gene Cluster Participating in Menaquinone (Vitamin K_2) Biosynthesis. Cloning and Sequence Determination of the 2-Heptaprenyl-1,4-naphthoquinone Methyltransferase Gene of Bacillus stearothermophilus" J.Biol.Chem.272・19. 12380-12383 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] M.Nagaki: "An Artificial Substrate for the Thermostable Famesyl Diphosphate Synthasefrom Bacillus stearothermophilus" Chem.Lett.6. 497-498 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] J.Tangpakdee: "Isopentenyl Diphosphate Isomerase and Prenyl Transferase Activities in Bottom Fraction and C-Serum from Hevea Latex" Phytochemistry. 45・2. 261-267 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] J.Tangpakdee: "Rubber Formation by Fresh Bottom Fraction of Hevea Latex" Phytochemistry. 45・2. 269-274 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] J.Tangpakdee: "Structure of in vitro Synthesized Rubber from Fresh Bottom Fraction of Hevea Latex" Phytochemistry. 45・2. 275-281 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] N.Ohya: "Isopentenyl Pyrophosphate Isomerase Activity in Lactarius Masgrooms" Phytochemistry. 46・6. 1115-1118 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] D.M.Marecak: "Benzoylphenoxy Analogs of Isoprenoid Diphosphates as Photoactivatable Substrates for Bacterial Prenyltransferases" Bioorg.Med.Chem.Lett.7・15. 1973-1978 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] N.Shimizu: "Molecular Cloning,Expression,and Characterization of the Genes Encoding the Two Essential Protein Components of Micrococcus luteus B-P 26 Hexaprenyl Diphosphate Synthase" J.Bacteriol.180・6(印刷中). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Ogura: "Dynamic Aspects of Natural Products Chemistry" Kodansha Scientific,K.Ogura and U.Sankawa ed., 1-23 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Ogura: "Subcellular Biochemistry,Vol.28,Cholesterol : Its Functions and Metabolism in Biology and Medicine" Plenum Publishing Company,J.R.Harris ed., 57-87 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Koyama: "Comprehensive Natural Product Chemistry" Elsevier Science Ltd.,Oxford,D.Barton and K.Nakanishi ed.(印刷中), (1998)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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