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Structure and function of NaィイD1+ィエD1-translocating V-type ATPase

Research Project

Project/Area Number 09480166
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionScience University of Tokyo

Principal Investigator

YAMATO Ichiro  Science University of Tokyo, Department of Biological Science and Technology, Professor, 基礎工学部, 教授 (70111458)

Co-Investigator(Kenkyū-buntansha) KAKINUMA Yoshimi  Chiba University, Faculty of Pharmaceutical Science, Associate Professor, 薬学部, 助教授 (80134394)
MEGURO Toshiyuki  Science University of Tokyo, Department of Biological Science and Technology, Assistant Professor, 基礎工学部, 助手 (20287478)
Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥9,600,000 (Direct Cost: ¥9,600,000)
Fiscal Year 1999: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1998: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1997: ¥5,600,000 (Direct Cost: ¥5,600,000)
KeywordsV-type ATPase / NaィイD1+ィエD1-translocating ATPase / Enterococcus hirae / purification & reconstitution / NaィイD1+ィエD1 binding / energy coupling mechanism / osmotolerance
Research Abstract

We have almost accomplished our proposed projects.
1.By characterizing gene-disrupted mutants of the NaィイD1+ィエD1-ATPase subunits, we have demonstrated that all of the nine subunits are necessary for the enzyme activity. Site-directed mutagenesis of A and K subunits revealed that Cys locating near the ATP binding site was related with the sensitivity for SH reagents of the V-type ATPase and that the primary structure around the conserved Glu residue (DCCD binding site) was essential for the ion-translocating function.
2.We characterized the purified ATPase. Subunits A to G and K plus I were the constituents. Subunits I and K were membrane-bound and others were releasable from the complex (VィイD21ィエD2VィイD20ィエD2) by EDTA treatment which belongs to the catalytic head piece (VィイD21ィエD2). The reconstituted ATPase was strictly NaィイD1+ィエD1 dependent.
3.The reconstituted ATPase pumped out NaィイD1+ィエD1electrogenically. While the membrane-bound portion (VィイD20ィエD2) functioned as a facilitated diffusion carrier transporting NaィイD1+ィエD1driven by membrane potential.
4.By fusing CAT gene under the ntp operon, we characterized the gene expression regulation. The gene expression was dependent on the NaィイD1+ィエD1concentration and also on alkaline pH.
5.Bindings of NaィイD1+ィエD1, ATP, ADP etc were characterized Membrane-bound portion had always a high binding affinity for NaィイD1+ィエD1. Addition of ATP caused the lowering of the affinity, which indicated that the energy of ATP hydrolysis works at the step to release NaィイD1+ィエD1 from the binding site.
6.We purified the head piece (VィイD21ィエD2) of this ATPase. For X-ray crystallography, we crystallized the VィイD21ィエD2 part. Now we are determining the three dimensional structure of it.

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (49 results)

All Other

All Publications (49 results)

  • [Publications] T. Murata: "Purification and reconstitution of Na^+-translocationg vacuolar ATPase from Enterococcus hirae."J. Biol. Chem.. 272. 24885-24890 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Suenaga: "Molecular dynamics simulation of unfolding of histidine-containing phosphocarrier protein in water."J. Chem. Software. 4No.4. 127-142 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Suenaga: "Computational observation of an ion permeation process through a channel protein."Bioscience Reports. 4No.1. 39-48 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Takeda: "Sequencing and characterization of xyl operon of a Gram-positive bacterium, Tetragenococcus halophila."Appl. Environ. Microbiol.. 64No.7. 2513-2519 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Abe: "Xylose transport insensitive to catabolite inhibition by phosphoenolpyruvate: sugar phosphotransferase system in Tetragenococcus halophila."Biosci. Biotechnol. Biochem.. 62No.9. 1676-1683 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Kawano: "The Na^+-responsible ntp operon is indispensable for homeostasis of K and Na in Enterococcus hirae at limited proton potential."J. Bacteriol.. 180No.18. 4942-4945 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Kawano: "NapA Na^+/H^+ antiporter as a sodium extrusion system supplementary to the vacuolar Na-ATPase in Enterococcus hirae."Biosci. Biotechnol. Biochem.. 62No.12. 2371-2374 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Kakinuma: "Inorganic cation transport and energy transduction ion Enterococcus hirae and other Streptococci."Microbiol. Mol. Biol. Rev.. 62No.4. 1021-1045 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Murata: "Properties of the V_0V_1 Na^+-ATPase from Enterococcus hirae and Its V_0 moiety."J. Biochem(Tokyo). 125No.2. 414-421 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Kakinuma: "Structure and function of vacuolar Na^+-translocationg ATPase in Enterococcus hirae."J. Bioenerg. Biomembr.. 31No.1. 7-14 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Kakinuma: "Potassium/proton antiport system is dispensable for growth of Enterococcus hirae at low pH."Biosci. Biotechnol. Biochem.. 63No.5. 875-878 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Takase: "Indispensable glutamic acid residue-139 of NtpK proteolipid in the reaction of vacuolar Na^+-translocating ATPase in Enterococcus hirae."Biosci. Biotechnol. Biochem.. 63No.6. 1125-1129 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Kawano: "Two major potassium uptake systems. KtrI and KtrII, in Enterococcus hirae."FEMS Microbiol. Lett.. 176. 449-453 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Ikegami: "Enterococcus hirae vacuolar ATPase is expressed in response to pll as well as sodium."FEBS Lett.. 454No.1. 67-70 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. kakinuma: "Isolation and properties of Enterococcus hiae mutants defeetive in the potassium proton antiport system."J. Bacteriol.. 181No.13. 4103-4105 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Murata: "Na^+ binding of V-type Na^+-ATPase in Enterococcus hirae."J. Biol. Chem.. in press. (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 山澄一郎: "生物工学基礎コース、微生物工学"丸善株式会社. 166 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Suenaga: "Progress in Cell Research, Vol. 6: Moleculaar Biophysics of Ion Channels"Elsevier Sci. Pub.. (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takeshi Murata: "Purification and reconstitution of NaィイD1+ィエD1-translocating vacuolar ATPase from Enterococcus hirae."J.Biol.Chem.. 272, No.40. 24885-2489 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Atsushi Suenaga: "Molecular dynamics simulation of outer membrane porins in Escherichia coli."Progress in Cell Research, Vol.6 : Molecular Biophysics of Ion Channels, (eds.M.Sokabe and A.Auerbach) Elsevier Sci.Pub., Amsterdam. 217-232 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Atsushi Suenaga: "Computational observations of an ion permeation process through a channel protein."Bioscience Reports. 18, No.1. 39-48 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Atsushi Suenaga: "Molecular dynamics simulation of unfolding of histidine-containing phosphocarrier protein in water."J.Chem.Software. 4, No.4. 127-142 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yasuo Takeda: "Sequencing and characterization of xyl operon of a Gram-positive bacterium, Tetragenococcus halophila."Appl.Environ.Microbiol.. 64, No.7. 2513-2519 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Keietsu Abe: "Xylose transport insensitive to catabolite inhibition by phosphoenolpyruvate : sugar phospho-transferase system in Tetragenococcus halophila."Biosci.Biotechnol.Biochem.. 64, No.9. 1676-1683 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyuki Kawano: "The NaィイD1+ィエD1-responsible ntp operon is indispensable for homeostasis of KィイD1+ィエD1 and NaィイD1+ィエD1 in Enterococcus hirae at limited proton potential."J.Bacteriol.. 180, No.18. 4942-4945 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyuki Kawano: "NapA NaィイD1+ィエD1/HィイD1+ィエD1 antiporter as a sodium extrusion system supplementary to the vacuolar NaィイD1+ィエD1-ATPase in Enterococcus hirae."Biosci.Biotechnol.Biochem.. 62, No.12. 2371-2374 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshimi Kakinuma: "Inorganic cation transport and energy transduction in Enterococcus hirae and other Streptococci."Microbiol.Mol.Biol.Rev.. 62, No.4. 1021-1045 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takeshi Murata: "Properties of the VィイD20ィエD2VィイD21ィエD2NaィイD1+ィエD1-ATPase from Enterococcus hirae and its VィイD20ィエD2 moiety."J.Biochem. (Tokyo). 125, No.2. 414-421 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshimi Kakinuma: "Structure and function of vacuolar NaィイD1+ィエD1-translocating ATPase in Enterococcus hirae."J.Bioenerg.Biomembr.. 31, No.1. 7-14 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshimi Kakinuma: "Potassium/proton antiport system is dispensable for growth of Enterococcus hirae at low pH."Biosci.Biotenhnol.Biochem.. 63, No.5. 875-878 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kazuma Takase: "Indispensable glutamic acid residue-139 of NtpK proteolipid in the reaction of vacuolar NaィイD1+ィエD1-translocating ATPase in Enterococcus hirae."Biosci.Biotechnol.Biochem.. 63, No.6. 1125-1129 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyuki Kawano: "Two major potassium uptake systems, KtrI and KtrII, in Enterococcus hirae."FEMS Microbiol.Lett.. 176. 449-453 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miho Ikegami: "Enterococcus hirae vacuolar ATPase is expressed in response to pH as well as sodium."FEBS Lett.. 454, No.1-2. 67-70 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshimi Kakinuma: "Isolation and properties of Enterococcus hirae mutants defective in the potassium/proton antiport system."J.Bacteriol.. 181, No.13. 4103-4105 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takeshi Murata: "NaィイD1+ィエD1 binding of V-typeNaィイD1+ィエD1-ATPase in Enterococcus hirae."J.Biol.Chem.. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.Murata: "Properties of the V_0V_1 Na^+-ATPase from Enterococcus hiras and Its V_0 moiety"J.Biochem.(Tokyo). 125 No.2. 414-421 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Kakinuma: "Structure and function of vacuolar Na^+-translocating ATPase in Enterococcus hirae"J.Bioenerg.Biomembr.. 31 No.1. 7-14 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Takase: "Indispensable glutamic acid residue-139 of NtpK proteolipid in the reaction of vacuolar Na^+-translocating ATPase in Enterococcus hirae"Biosci.Biotechnol. Biochem.. 63 No.6. 1125-1129 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M.Ikegami: "Enterococcus hirae vacuolar ATPas is expressed in response to pH as well as sodium"FEBS Lett.. 454 No.1-2. 67-70 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] A.Suenaga: "Molecula dynamics simulation of unfoldong of histidine-containing phosphocarrier prtein in water." J.Chem.Software. 4No.4. 127-142 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Suenaga: "Computational observation of an ion permeation process through a channel protein." Bioscience Reports. 4No.1. 39-48 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Takeda: "Sequencing and characterization of xyl operon of a Gram-positive bacterium,Tetragenococcus halophila." Appl.Environ.Microbiol.64No.7. 2513-2519 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Abe: "Xylose transport insensitive to catabolite inhibition by phosphoenolpyruvate:sugar phosphotransferase system in Tetragenococcus halophila." Biosci.Biotechnol.Biochem.62No.9. 1676-1683 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Murata: "Properties of the V_0V_1 Na^+-ATPase from Enterococcus hirae and Its V_0 moiety." J.Biochem(Tokyo). 125No.2. 414-421 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Kakinuma: "Structure and function of vacuolar Na^+-translocating ATPase in Enterococcus hirae." J.Bioenerg.Biomembr.(in press). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Murata: "Purification and reconstitution of Na^+-translocating vacuolar ATPase from Enterococcus hirae." J.Biol.Chem.272. 24885-24890 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] A.Suenaga: "Molecular dynamics simulation of unfolding of histidine-containing phoshocarrier protein in water." J.Chem.Software. (in press). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 山登一郎: "生物工学基礎コース、微生物工学" 丸善株式会社, 166 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] A.Suenaga: "Progress in Cell Research,Vol.6: Molecular Biophysics of Ion Channels" Elsevier Sci.Pub., (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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