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Structures and functions of metalloflavoenzymes which produce free radicals

Research Project

Project/Area Number 09480167
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionNIPPON MEDICAL SCHOOL

Principal Investigator

NISHINO Takeshi  NIPPON MEDICAL SCHOOL, BIOCHEMISTRY AND MOLECULAR BIOLOGY, Professor, 医学部, 教授 (40094312)

Co-Investigator(Kenkyū-buntansha) OKAMOTO Ken  NIPPON MEDICAL SCHOOL, BIOCHEMISTRY AND MOLECULAR BI0LOGY, Assistant, 医学部, 助手 (60267143)
MATSUMURA Tomohiro  NIPPON MEDICAL SCHOOL, BIOCHEMISTRY AND MOLECULAR BIOLOGY, Assistant, 医学部, 助手 (20297930)
IWASAKI Toshio  NIPPON MEDICAL SCHOOL, BIOCHEMISTRY AND MOLECULAR BIOLOGY, Lecturer, 医学部, 講師 (40277497)
堀 弘幸  日本医科大学, 医学部, 助手 (20256960)
永原 則之  日本医科大学, 医学部, 助教授 (10208043)
Project Period (FY) 1997 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥12,200,000 (Direct Cost: ¥12,200,000)
Fiscal Year 2000: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 1999: ¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 1998: ¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 1997: ¥4,700,000 (Direct Cost: ¥4,700,000)
Keywordsreactive oxygen species / xanthine dehydrogenase / xanthine oxidase / niric oxide synthase / metallo-protein / non-heme iron / peroxiredoxin / heme binding protein / NO合成酵素 / 金属フラビン酵素 / セロビオース脱水素酵素 / 電子スピン共鳴 / X線結晶構造 / フリーラジカル / EPR / nNOS / Xanthine Oxidase / Xanthine Dehydrogenase / Flavoprotein / metalloprotein / free radical / nitric oxide / super oxide anion
Research Abstract

Xanthine dehydrogenase/oxidase and nitric acid synthetase are complex flavoprotein that produce free radicals. In this study, we presented the crystal structure of the dimeric (Mr 290,000) bovine milk XDH at 2.1 Å resolution and XO at 2.5 Å resolution and describe the major changes that occur upon the proteolytic transformation of XDH to the XO form. Each molecule is composed of an N-terminal 20 kDa domain containing two iron sulfur centers, a central 40 kDa FAD domain, and a C-terminal 85 kDa molybdopterin-binding domain with the four redox centers aligned in an almost linear fashion. Cleavage of surface-exposed loops of XDH causes major structural rearrangement of another loop close to the flavin ring (Gin-423-Lys-433). This movement partially blocks access of the NAD substrate to the FAD cofactor and changes the electrostatic environment of the active site, reflecting the switch of substrate specificity observed for the two forms of this enzyme. We have also constructed several mutant enzyme of rat liver XDH and determined the character to confirm the responsible residues for conversion.
We have expressed mouse neuronal nitic acid synthase (NOS) as well as the iso-form of natural mutant and determined characters of the enzymes by several physicochemical methods. We have also studied some other related enzymes such as heme containing flavo-protein, cellobiose dehydrogenase, and heme binding protein, HBP23 has peroxidase activity.

Report

(5 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (50 results)

All Other

All Publications (50 results)

  • [Publications] T.Iwasaki,K.Okamoto,T.Nishino,J.Mizushima,H.Hori,and T.Nishino.: "Sequence Motif- specific Assignment of Two [2Fe-2S] Clusters in Rat Xanthine Oxidoreductase Studied by Site-directed Mutagenesis"J.Biochem. 127. 771-778 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Kitagawa,M.Morisima,T.Nishino,and E.Kimura.: "(Review) Progress on "Molecular Biometallics" as a Project of the Priority Areas for Research under the Auspices of Japanese Government"J.Biol.Inorg.Chem.. 5. 410-415 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Nishino and K.Okamoto.: "(Reveiew) The Role of the [2Fe-2S] Cluster Centers in Xanthine Oxidoreductase."J.Inorg.Biochem.. 82. 43-49 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] C.Enroth,B.T.Eger,K.Okamoto,T.Nishino,T.Nishino,and E.F.Pai.: "Crystal Structures of Bovine Milk Xanthine Dehydrogenase and Xanthine Oxidase : Structure-Based Mechanism of Conversion"Proc.Natle.Acad.Sci.,USA. 97. 10723-10728 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] B.T.Eger,K.Okamoto,C.Enroth,M.Sato,T.Nishino,E.F.Pai,and T.Nishino.: "Purification, crystallization and preliminary X-ray diffraction studies of xanthine Dehydrogenase and xanthine Oxidase isolated from bovine milk."Acta Cryst.. D56. 1656-1658 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] J.Park,T.Higuchi,K.Kikuchil,Y.Urano,H.Hori,T.Nishino,J.Aoki,K.Inoue & T.Nagano: "Selective inhibition of human inducible nitric oxide synthase by S-alkyl-L-isothiocitrulline-containing dipeptides."Brithish J.Pharm.. 274(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 広津晶子,阿部靖子,西野武士,箱嶋敏雄: "ペルオキシレドキシンの分子機能の構造的基盤"蛋白質・核酸・酵素. 45. 2463-2474 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Iwasaki,,H.Hori,Y,Hayashi, et al.(Nishino,T.): "Characterization of mouse nN0S2, a natural variant of neuronal nitric-oxide synthase produced in the central nervous system by selective alternative splicing."J.Biol.Chem.. 274. 17559-17566 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Nishino etcetera: "FLAVINS AND FLAVOPROTEINS"RUDOLF WEBER AGENCY FOR SCIENTIFIC PUBLICATIONS. 26 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Iwasaki, K.Okamoto, T.Nishino, J.Mizushima, H.Hori, and T.Nishino.: "Sequence Motif-specific Assignment of Two [2Fe-2S] Clusters in Rat Xanthine Oxidoreductase Studied by Site-directed Mutagenesis"J.Biochem.. 127. 771-778 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Kitagawa, M.Morisima, T.Nishino, and E.Kimura.: "(Review) Progress on "Molecular Biometallics" as a Project of the Priority Areas for Research under the Auspices of Japanese Government"J.Biol.Inorg.Chem.. 5. 410-415 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Nishino and K.Okamoto.: "(Reveiew) The Role of the [2Fe-2S] Cluster Centers in Xanthine Oxidoreductase."J.Inorg.Biochem.. 8243-49 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] C.Enroth, B.T.Eger, K.Okamoto, T.Nishino, T.Nishino, and E.F.Pai.: "Crystal Structures of Bovine Milk Xanthine Dehydrogenase and Xanthine Oxidase : Structure-Based Mechanism of Conversion"Proc.Natle.Acad.USA. 97. 10723-10728 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] B.T.Eger, K.Okamoto, C.Enroth, M.Sato, T.Nishino, E.F.Pai, and T.Nishino.: "Purification, crystallization and preliminary X-ray diffraction studies of xanthine Dehydrogenase and xanthine Oxidase isolated from bovine milk."Acta Cryst.. D561656-1658 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] J.Park, T.Higuchi, K.Kikuchi1, Y.Urano, H.Hori, T.Nishino, J.Aoki, K.Inoue & T.Nagano: "Selective inhibition of human inducible nitric oxide synthase by S-alkyl-L-isothiocitrulline-containing dipeptides."Brithish J.Pharm.. 274(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Iwasaki, , H.Hori, Y,Hayashi, et al.(Nishino, T.): "Characterization of mouse nNOS2, a natural variant of neuronal nitric-oxide synthase produced in the central nervous system by selective alternative splicing."J.Biol.Chem.. 274. D561656-1658 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Iwasaki,K.Okamoto,T.Nishino,J.Mizushima,H.Hori,and T.Nishino.: "Sequence Motif-specific Assignment of Two [2Fe-2S] Clusters in Rat Xanthine Oxidoreductase Studied by Site-directed Mutagnesis"J.Biochem.. 127. 771-778 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Kitagawa,M.Morisima,T.Nishino,and E.Kimura.: "(Review) Progress on "Molecular Biometallics" as a Project of the Priority Areas for Research under the Auspices of Japanese Government"J.Biol.Inorg.Chem.. 5. 410-415 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Nishino and K.Okamoto.: "(Reveiew) The Role of the [2Fe-2S] Cluster Centers in Xanthine Oxidoreductase."J.Inorg.Biochem.. 82. 43-49 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] C.Enroth,B.T.Eger,K.Okamoto,T.Nishino,T.Nishino,and E.F.Pai.: "Crystal Structures of Bovine Milk Xanthine Dehydrogenase and Xanthine Oxidase : Structure-Based Mechanism of Conversion"Proc.Natle.Acad.Sci.,USA. 97. 10723-10728 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] B.T.Eger,K.Okamoto,C.Enroth,M.Sato,T.Nishino,E.F.Pai,and T.Nishino.: "Purification, crystallization and preliminary X-ray diffraction studies of xanthine Dehydrogenase and xanthine Oxidase isolated from bovine milk."Acta Cryst.. D56. 1656-1658 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] J.Park,T.Higuchi,K.Kikuchi1,Y.Urano,H.Hori,T.Nishino,J.Aoki,K.Inoue & T.Nagano: "Selective inhibition of human inducible nitric oxide synthase by S-alkyl-L-isothiocitrulline-containing dipeptides."Brithish J.Pharm.. 274(in press).

    • Related Report
      2000 Annual Research Report
  • [Publications] 広津晶子,阿部靖子,西野武士,箱嶋敏雄: "ペルオキシレドキシンの分子機能の構造的基盤"蛋白質・核酸・酵素. 45. 2463-2474 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Nishino etcetera: "FLAVINS AND FLAVOPROTEINS"RUDOLF WEBER AGENCY FOR SCIENTIFIC PUBLICATIONS. 26 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Iwasaki,,H.Hori,Y.Hayashi, et al. (Nishino,T.): "J.Biol.Chem."Characterization of mouse nNOS2, a natural variant of neuronal nitric-oxide synthase produced in the central nervous system by selective alternative splicing.. 17559-17566 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Hori,T.Iwasaki,Y.Kurahashi, and T.Nishino: "Calcium Dependent Inactivation of Neuronal Nitric Oxide Synthase: Evidence for the Existence of Stabilization/Activation Factor."Biochem. Biophys. Res. Commun.. 234. 476-480 (1997)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Nishino and T.Nishino: "Conversion of the dehydrogenase type to the oxidase type of rat liver xanthine dehydrogenase by midification of cysteine residues with fluorodinitrobenzene."J. Biol. Chem.. 272. 29859-29864 (1997)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Igarashi,M.Verhagen,M.Samejima,M.Schulein,K.L.Eriksson and T.Nishino: "Cellobiose dehydrogenase from the fungi Phanerochaete chrysoporium and Humicola insolens; A flavoprotein from Humicola insolens contains 6-hydroxy-FAD as the dominant active cofactor."J. Biol. Chem.. 274. 3338-3344 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Ichimori,M.Fukahori,H.Nakazawa,K.Okamoto and T.Nishino: "Inhibition of xanthine oxidase and xanthine dehydrogenase by nitric oxide; nitric oxide converts reduced xanthine oxidizing enzymes into the desulfo-type inactive form."J. Biol. Chem.. 274. 7763-7768 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Iwasaki,H.Hori,Y.Hayashi,T.Nishio,: "Modulation of the remote heme site geometry of recombinant mouse neuronal nitric oxide synthase by the N-terminal hook region."J. Biol. Chem.. 274. 7705-7713 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Iwasaki,H.Hori,Y.Hayashi,T.Nishino,K.Tamura,S.Oogami,T.Iizuka,T.Ogura and H.Esumi: "Characterization of mouse nNOS2, a natural variant of neuronal nitric-oxide synthase produced in the central nervous system by selective altemative splicing."J. Biol. Chem.. 274. 17559-17566 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Hirotsu,Y.Abe,S.Iwahashi,H.Hori,T.Nishino,K.Okada, and T.Hakoshima: "Crystallographic characterization of a stress-induced multifunctional protein, rat HBP23""J. Struct. Biol.. 126. 80-83 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Hirotsu,Y.Abe,K.Okada,N.Nagahara,H.Hori,T.Nishino, and T.Hakoshima: "Crystal strucure of a multifunctional 2-Cys peroxiredoxin, HBP23/PAG"Proc. Natl. Acad. Sci. U.S.A.. 96. 12333-12338 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ichida K.Kamatani N.Nishino T.Saji M.Okabe H.Hosoya T.: "Mutations in xanthine dehydrogenase gene in subjects with hereditary xanthinuria" Adv.Exp.Med.Biol.431. 327-330 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] N.Nagahara, Ito T.Kitamura H.and T.Nishino: "Tissue and subcellular distribusion of mercaptopyruvate sulfur transferase in rat" Histochem.Cell Biol.10. 243-250 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Otsubo, Y., Hori, H., Nishino, T.and Araki, T.: "Comparison of nitric oxide synthase in normal human placenta from 37 to 41 weeks gestation" J.Maternal-fetal Inves.8. 139-144 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Igarashi, M.Verhagen, M.Samejima, M.Schulein, K.L.Eriksson and T.Nishino: "Cellobiose dehydrogenase from the fungi Phanerochaete chrysoporium and Humicola insolens" J.Biol.Chem.274. 3338-3344 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Ichimori, M.Fukahon, H.Nakazawa, K.Okamoto and T.Nishino: "Inhibition of xanthine oxidase and xanthine dehydrogenase by nitric oxide" J.Biol.Chem.274. 7763-7768 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Iwasaki, H.Hori,Y.Hayashi, T.Nishino: "Modulation of the remote heme site geometry of recombinant mouse neuronal nitric oxide synthase by the N-terminal hook region" J.Biol.Chem.274 in press.

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Iwasaki, H.Hori, Y.Hayashi, T.Nishino, K.Tamura, S.Oogami, T.Iizuka, T.Ogura and H.Esumi: "Characterization of nNOS, a natural valiant of neuronal nitric oxide synthase constitutively produced in mouse brain by selective alternative splicing" J.Biol.Chem.274 in press.

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Nishino,T.Nishino,K.Okamoto,S.Nakanishi,H.Hori,T.Iwasaki,Y.Ichimori,H.Nakazawa: "Conversion of xanthine dehydrogenase to oxidase and role of reperfusion injury." Biochem.Trans.25,. 783-786 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Ichida,Y.Amaya,N.Kamatani,T.Nishino,T.Hosoya,O.Sakai: "Identification of two mutations in human xanthine dehydrogenase gene responsible for classical type I xanthinuria." J.Clin.Inves.99,. 2391-2397 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Nishino and T.Nishino: "Conversion of the dehydrogenase type to the oxidase type of rat liver xanthine dehydrogenase by midification of cysteine residues with fluorodinitrobenzene." J.Biol.Chem.272,. 29859-29864 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Hori,T.Iwasaki,Y.Kurahashi,T.Nishino: "Calcium Dependent Inactivation of Neuronal Nitric Oxide Synthase:Evidence for the Existence of Stabilization / Activation Factor." Biochem.Biophys.Res.Commun.234,. 476-480 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Otsubo,H.Hori,R.Sawa,S.Susumi,T.Nishino T.Araki.: "Activity and isoform of Nitric oxide Synthase in Human Placenta." J.Jpn.Soc.Women Nutr.Metab.3,. 16-18 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] H.Hori,T.Iwasaki,Y.Kurahashi,Y.Hayashi,M.Umeda,T.Nishino.: "Effect of phospholipids on calcium-dependent inactivation of neuronal nitric oxide synthase." Jpn.J.Pharmacol.75,. 26 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Nishino,Y.Kashima,K.Okamoto,T.Iwasaki,T.Nishino: "Favins and Flavoproteins,Calgary Press," K.Stevenson,CH.Williams and V.Massey eds., 843-846 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Niimura,K.Ohnishi,et al.,T.Nishino: "Favins and Flavoproteins,Calgary Press," K.Stevenson,CH.Williams and V.Massey eds., 741-750 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] K.Okamoto,T.Nishino: "Favins and Flavoproteins,Calgary Press," K.Stevenson,CH.Williams and V.Massey eds., 839-842 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Nishino,K.Okamoto,H.Hori and T.Nishino S.Nakanishi,: "Oxygen homeostasis and its dynamic,Springer-Verlag," Y.Ishimura et al.eds., 333-339 (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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