• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

RNA polymerase activation mechanism by regulatory proteins

Research Project

Project/Area Number 09480170
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

TANAKA Isao  Hokkaido Univ., Graduate School of Sciences, Pro., 大学院・理学研究科, 教授 (70093052)

Co-Investigator(Kenkyū-buntansha) NISHIHIRA Jun  Hokkaido Univ. Faculty of Medicals, Asso. Pro., 医学部, 助教授 (30189302)
NAKAGAWA Atsushi  Osaka Univ., Institute for Protein Research, Asso. Pro., 蛋白質研究所, 助教授 (20188890)
Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥12,100,000 (Direct Cost: ¥12,100,000)
Fiscal Year 1999: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1998: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 1997: ¥6,800,000 (Direct Cost: ¥6,800,000)
KeywordsCrystal structure analysis of protein / DNA-binding proteins / Transcription factor
Research Abstract

In Escherichia coli, expression of the major outer membrane porin proteins. OmpC and OmpF, is regulated at the transcriptional level in response to medium osmolarity. Two regulatory factors, OmpR and EnvZ, are involved in this osmoregulation. OmpR is the cytoplasmic activator protein, which binds to the recognition sequence in both ompC and ompF promoters. The membrane-bound EnvZ senses the osmolarity outside the cell and exhibits OmpR-specific kinase and phosphatase activity. EnvZ-mediated phosphorylation of OmpR activates the protein, which results in binding to the omp genes. As is the case for many other response regulators, the 239 amino acid OmpR consists of two distinct domains: the N-terminal domain of OmpR contains a site that is phosphorylated and the C-terminal domain exhibits an inherent DNA-binding ability specific to the cognate promoters. An inspection of the E.coli genome DNA sequences revealed that there are at least 16 proteins whose amino acid sequences show extensive similarities to that of OmpR (OmpR-family of proteins). An amino acid sequence alignment with the tertiary structure of OmpR in hand suggests that all these family proteins are folded into a similar tertiary structure by the interactions of the well conserved hydrophobic residues. KdpE is one of the members of the OmpR-family, which is involved in the regulation of turgor pressure. One of the mutant proteins which show the ability to recognize KdpE promoter sites was purified and was successfully crystallized. The diffraction data was collected using synchrotron radiation at the Photon Factory.

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (13 results)

All Other

All Publications (13 results)

  • [Publications] T.Tominaga et al.: "High-Resolution Crystals of the HU Mutant K38N from Bacillus Stearothermophilus"J.Struct.Biol.. 125. 86-89 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.W.White et al.: "The high-resolution structure of DNA-binding protein HU from Bacillus stearothermophilus"Acta Cryst.. D55. 801-809 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] F.Saitoh et al.: "Arginine-55 in the β-Arm is Essential for the Activity of DNA-Binding Protein HU from Bacillus stearothermophilus"Biosci.Biotech.Biochem.. 63. 2232-2235 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Tominaga et al.: "High-Resolution Crystals of the HU Mutant K38N from Bacillus Stearothermophilus"J. Struct. Biol.. 125. 86-89 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.W. White et al.: "The high-resolution structure of DNA-binding protein HU from Bacillus stearothermophilus"Acta Cryst.. D55. 801-809 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] F. Saitoh et al.: "Arginine-55 in the P -Arm is Essential for the Activity of Bacillus from HU DNA-Binding Protein stearothermophilus"Biosci. Biotech. Biochem.. 63-12. 2232-2235 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Tominaga, et al.: "High-Resolution Crystals of the HU Mutant K38N from Bacillus stearothermophilus"J. Struct. Biol.. 125. 86-89 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S. W. White, et al.: "The high-resolution structure of DNA-binding protein HU from Bacillus stearothermophilus"Acta Cryst.. D55. 801-809 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] F. Saitoh, et al.: "Arginine-55 in the β-Arm is Essential for the Activity of DNA-Binding Protein HU from Bacillus stearothermophilus"Biosci .Biotech. Biochem.. 63・12. 2232-2235 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] I.Tanaka et.al.: "Matching the crystallographic structure of ribosomal protein S7 to a three-dimonsional model of the 165 ribosomal RNA" RNA. 4. 542-555 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] J.Nishihira et.al.: "Molecular cloning of human D-dopachaome Tautomerare c DNA N-Terminal proline is essential for enzyme activation" Biochem.Biophys.Res.Comm.243. 538-544 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] H.Kondo: "Escheridmia coli Positive regulator OmpR has a lange loop Structure at the RNA polymerase interaction site" Nature Struct.Biol.4. 28-31 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] T.Mizuno: "Structure of the DNA-binding domain of the OmpR family proteins" Mol.Microbial. 24. 665-667 (1997)

    • Related Report
      1997 Annual Research Report

URL: 

Published: 1997-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi