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Development of primate cDNA library using cultured cell

Research Project

Project/Area Number 09554056
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 人類学(含生理人類学)
Research InstitutionThe University of Tokyo

Principal Investigator

KAWAMURA Shoji  University of Tokyo, Graduate School of Frontier Sciences, Associate Professor, 大学院・新領域創成科学研究科, 助教授 (40282727)

Co-Investigator(Kenkyū-buntansha) ISHIDA Takafumi  University of Tokyo, Graduate School of Science, Associate Professor, 大学院・理学系研究科, 助教授 (20184533)
Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 1999: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1998: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1997: ¥7,100,000 (Direct Cost: ¥7,100,000)
Keywordsprimates / New world monkey / cultured cell / cDNA library / visual pigment / vertebrates / evolution / diversity / cDNAライブラリー / PCR / 細胞バンク / 原猿 / _cDNAライブラリー
Research Abstract

We have constructed cDNA libraries from immortalized cell lines of lymphocytes or fibroblasts isolated from the following 14 species of primates : Pan troglodytes, Pan paniscus, Gorilla gorilla, Pongo pygmaeus, Hylobates syndactylus, Hylobates concolor, Cercopithecus mitis, Erythrocebus patas, Presbytis entellus, Colobus polykomos, Callithrix jachus, Saguinus oedipus, Tarsius bancanus, and Galago senegalensis. In order to examine tissue-NON-specific gene expression, we tested expression of visual pigment gene in the cDNA libraries. No expression was detected in all libraries. Visual pigments comprise a gene family, which shows a variety of light absorption characteristics, and exhibit remarkable evolutionary diversity among animals possibly due to adaptation to particular light environment. Generally only single type of visual pigment is expressed in a given photoreceptor cell. Therefore, it is of great importance to examine the variation of visual pigments among animals and mechanism … More of cell-type-specific gene expression. We examined genomic organization and spectral properties of visual pigment genes of New World primates, rodents, birds, and fish. By applying molecular cloning, Southern hybridization, chromosome FISH, and visual pigment regeneration to common marmoset, we found that the tri-allelic single-locus X-chromosome model on the red-green visual pigments holds for marmosets under the unique phenomenon, known as blood chimerism. Applying the same methods, we found owl monkeys to have multiple green visual pigment genes on Y chromosome, most of which appeared to be nonfunctional. Capuchin monkeys also appeared to have two red-green gene loci based on the result of Southern hybridization. We cloned all visual pigment genes from pigeon, one of which corresponded to UV-sensitive visual pigment.
Absorption spectra of UV pigments were also determined for mouse, rat, and goldfish. These results greatly deepened our understanding of evolution and diversity of vertebrate visual pigments and visual systems. Less

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (34 results)

All Other

All Publications (34 results)

  • [Publications] Yokoyama,S. 他: "Regeneration of ultraviolet pigments of vertebrates"FEBS Letters. 423. 155-158 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kawamura,S. 他: "Genetic analysis of visulal pigments of the pigeon (Columba livia)"Genetics. 153. 1839-1850 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 河村正二: "新世界ザルRed-Green視物質遺伝子と色覚の進化"霊長類研究. 16. 111-124 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kawamura,S. 他: "Genomic and spectral analyses of long to middle wavelength -sensitive visual pigments of common marmoset (callithrix jacchus)"Gene 印刷中.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fujimoto,M. 他: "The gene for mesomelic dysplasia Kantapra type is mapped to chromosome 2q24-32"Journal of Human Genetics. 43. 32-36 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishida,T. 他: "Preliminary roport on the short stature of Southeast Asian forest dwellers the Manni, in Southern Thailand : lack of an adolescent spurt in plasma IGF-I concentration"Southeast Asian Journal of Tropical Medicine and Public Health. 29. 62-65 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kimura,M. 他: "Twenty seven base pair deletion in erythrocyte band 3 protein gene responsible for Southeast Asian ovalocytosis is not common among Southeast Asian"Human Biology. 70. 993-1000 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Jin,F. 他: "Population genetic studies on nine aboriginal ethnic groups of Taiwan. I. Red cell enzyme systems"Anthropological Science. 107. 229-246 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishida,T. 他: "Human T-lymphotropic retrovirus type-1 in Thailand"Southeast Asian Journal of Tropical Medicine and Public Health. 31(印刷中). (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Pranomo,Z. 他: "A novel cryptic exon in intron 2 of the dystrophin gene evolved from intron by creating consensus sequewes for splicing in different stages of the anthropoid evolution"Biochemical Biophysical Research Communications. 267. 321-328 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shimizu,Y. 他: "Sero-and molecular-typing of Dufty blood group in Southeast Asian and Dreanians : demonstration of cryptic genotypes by PCR-RFLP study"Human Biology. 72. 511-518 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takao,S. 他: "Seroprevalence of human T-lymphotropic Virus type 1 in Papu a New Guinea and IrianJaya measured using different Western blot criteria"Journal of Clinical Virology. 16. 129-133 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yokoyama, S., Rad wimmer, F.B., and Kawamura, S.: "Regeneration of ultraviolet pigments of vertebrates."FEBS Letters. 423. 155-158 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kawamura, S., Blow, N.S., and Yokoyama, S.: "Genetic analyses of visual pigments of the pigeon (Columba livia)."Genetics. 153. 1839-1850 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kawamura, S.: "Evolution of red-green visual pigment genes and color vision of New World monkeys. (in Japanese)"Primate Research. 16. 111-124 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kawamura, S., Hirai, M., Takenaka, O., Rad wimmer, F.B., and Yokoyama, S.: "Genomic and spectral analyses of long to middle wavelength-sensitive visual pigments of common marmoset (Callithrix jacchus)."Gene. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fujimoto, M., Kantaptra, P., Ikegawa, S., Fikushima, Y., Sonta, S., Matsuo, M., Ishida, T., Matsumoto, T., Kondo, S., Tomita, H., Deng, H.-X., Ventrudo, V., Takagi, T., Nakamura, Y., and Niikawa, N.: "The gene for mesomelic dysplasia Kantapra type is mapped to chromosome 2q24-32."Journal of Human Genetics. 43. 32-36 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishida, T., Suzuki, J., Dunagchan, P., and Settheetham-Ishida, W.: "Preliminary report on the short stature of Southeast Asian forest dwellers, the Manni, in Southern Thailand : lack of an adolescent spurt in plasma IGF-I concentration."Southeast Asian Journal of Tropical Medicine and Public Health. 29. 62-65 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kimura, M., Shimizu, Y., Settheetham-Ishida, W., Soemantri, Ag., Tiwawech, D., Romphruk, A., Duangchan, P., and Ishida, T.: "Twenty seven base pair deletion in erythrocyte band 3 protein gene responsible for Southeast Asian ovalocytosis is not common among Southeast Asian."Human Biology. 70. 993-1000 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Jin, F., Saiyou, N., Ishida, T., Sun, C.-S., Pan, I-H., Omoto, K.and Horai, S.: "Population Genetic studies on nine aboriginal ethnic groups of Taiwan. I.Red cell enzyme systems."Anthropological Science. 107. 229-246 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishida, T., Appassakij H., Takao, S., Settheetham-I,W., Tiwawech, D., and Duangchan, P.: "Human T-lymphotropic retrovirus type-1 in Thailand."Southeast Asian Journal of Tropical Medicine and Public Health. 31 : (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Pranomo, Z., Takeshima, Y., Surono, A., Ishich, T.and Matsuo, M.: " A novel cryptic exon in intron 2 of the dystrophin gene evolved from intron by creating consensus sequences for splicing in different stages of the anthropoid evolution."Biochem.Biophys.Res.Commun.. 267. 321-328 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shimizu, Y., Ao, H., Soemantri, Ag., Tiwawech, D., Settheetham-Ishida, W., Kayame, O.W., Nishioka, T.and Ishida, T.: " Sero-and molecular-typing of Duffy blood group in Southeast Asians and Oceaniams : demonstration of cryptic genotypes by the PCR-RFLP study."Human Biology. 72. 511-518 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takao, S., Ishida, T., Bhatia, K.K.Soemantri, Ag., Saha, N., and Kayame, O.W.: " Seroprevalence of human T-lymphotropic virus type 1 in Papua New Guinea and Irian Jaya measured using different Western blot criteria."Journal of Clinical Virology. 16. 129-133 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Kawamura 他: "Genetic analysis of visual pigments of the pigeon(columba livia)"Genetics. 153巻. 1839-1850 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S. Takao 他: "Seroprevalence of human T-lymphotropic virus typel in Papua New Guinea and Iran Jaya measured using different Western blot criteria"Journal of Clinical Virology. 16巻. 127-131 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] T. Ishida 他: "Human T-lymphotropic retrovirus type-1 in Thailand"Southeast Asian Journal of Tropical Medicine and Public Health. (印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] ZAD Pranomo 他: "A novel cryptic exam in intron2 of the dystrophin gene evolved from intron by creating consensus sequences for splicing in different stages of the anthropoid evolution"Biochemical Biophysical Research Communications. 267巻. 321-328 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Shimizu 他: "Sero- and molecular- typing of Duffy blood group in Southeast Asians and Oceanians : demonstration of cryptic genotypes by the PCR-RFLP study"Human Biology. 72巻(印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] F. Jin 他: "Population genetic studies on nine aboriginal ethnic groups of Taiwan.1,red cell enzyme systems"Anthropological Science. 107. 229-246 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M.Fujimoto 他: "The gene for mesomelic dysplasia Kantaptra type is mapped to chromosome 2q24-32" Journal of Human Genetics. 43巻. 32-36 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Ishida 他: "Preliminary report on the short stature of Southeast Asian forest dwellers,the Manni in Southern Thailand:lack of an adolescent spurt in plasma JGF-1 conventrator" Southeast Asian Journal of Tropical Medicine and Public Health. 29巻. 62-65 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Kimura 他: "Twenty seven base pair deletion in erythrocyte band 3 protein gene resposible for Southeast Asian ovalocytosis is not common among Southeast Asian" Human Biology. 70巻. 993-1000 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Yokoyama 他: "Regeneration of ultravialet pigments of vertebrates" FEBS Letters. 423巻. 155-158 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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