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Molecular design of inhibitors for DNA replication in Escherichia coli

Research Project

Project/Area Number 09557198
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Biological pharmacy
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

SEKIMIZU Kazuhisa  Faculty of Pharmaceutical Sciences, Kyushu University, Professor, 薬学部, 教授 (90126095)

Co-Investigator(Kenkyū-buntansha) MIKI Takeyoshi  Faculty of Pharmaceutical Sciences, Kyushu University, Associate Professor, 薬学部, 助教授 (40037586)
SASAKI Shigeki  Faculty of Pharmaceutical Sciences, Kyushu University, Associate Professor, 薬学部, 助教授 (10170672)
Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥10,800,000 (Direct Cost: ¥10,800,000)
Fiscal Year 1998: ¥4,800,000 (Direct Cost: ¥4,800,000)
Fiscal Year 1997: ¥6,000,000 (Direct Cost: ¥6,000,000)
KeywordsDnaA protein / Esherichia coli / DNA replication / DNA polymerase III / the dnaN genen / oriC replication / DnaAタンパク / ATP / 抗菌剤 / Walkerモチーフ / 部位特異的変異
Research Abstract

Initiation of DNA replication in cells is negatively or positively regulated by various factors. We tried to identify those regulating factors by using biochemical and genetic approaches. In crude extacts of E.coli, we identified an activity (RIDA, regulatory inhibition of DnaA protein) which stimulates hydrolysis of ATP bound to DnaA protein, the initiator of DNA replication in E coli. Purification of this factor demonstrated that the beta subunit of DNA polymerase III holoenzyme is responsible for this activity. In a mutant cells of the dnaN gene, which encodes the beta subunit, the ADP-binding form of DnaA protein, which is inactive for DNA replicatoin, was shown to be accumulated. The result confirms that the beta subunit stimulates hydrolysis of ATP bound to DnaA protein. This is the first report indicating that a subunit of DNA polymerase, which is responsible for catalytic reaction of DNA synthesis, negatively regulates initiation of DNA replication.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] Katayama, T., Kubota, T., Kurokawa, and Sekimizu, K: "The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase." Cell. 94,. 61-71 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mizushima, T., Takaki, T., Katayama, Tand Sekimizu, K.: "Site-directed mutational analysis for the ATP binding of DnaA protein." J. Biol. Chem.273,. 20847-20851 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kurokawa, K., Mizushima, T., Katayama, T., and Sekimizu, K.: "A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli." Biochem. Biophys. Res. Commun.243,. 90-95 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Hase, M., Ishikawa, Y., Sekimizu, K., and T. Mizushima: "Effect of glycerol on the affinity of DnaA protein for ATP in the presence of cardiolipin." J. Biochem.123,. 680-683 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Ohba, A., Inoue, R., Akimitsu, N., and Sekimizu, K.: "Identification of proteins whose amounts are altered by mutation in the pgsA gene of Escherichia coli." Biol. Pharm Bull.21,. 1139-1141 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katayama, T., Kubota, T., Kurokawa, K., Crooke, E., and Sekimizu, K.: "The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E.coli chromosomal replicase" Cell. 94. 61-71 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mizushima T., Takaki, T., Kubota, T., Tsuchiya, T., Miki, T., Katayama, T., and Sekimizu, K.: "Site-directed mutational analysis for the ATP binding of DnaA protein." J.Biol.Chem.273. 20847-20851 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kurokawa, K., Mizushima, T., Kubota, T., Tsuchiya, T., Katayama, T., and Sekimizu, K.: "A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli" Biochem.Biophys.Res.Commun.243. 90-95 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Hase, M., Ishikawa, Y., Sekimizu, K., Tsuchiya, T., and T.Mizushima: "Effect of glycerol on the affinity of DnaA protein for ATP in the presence of cardiolipin." J.Biochem.123. 680-683 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Ohba, A., Inoue, R., Akimitsu, N., Mizushima, T., and Sekimizu, K.: "Identification of proteins whose amounts are altered by mutation in the pgsA gene of Escherichia coli." Biol.Pharm Bull.21. 1139-1141 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katayama,T.Kubota,T.Kurokawa,andSekimizu,k.: "The initiator function of DnaA protein is negatively regulated by the sliding clemp of the E.coli chromosomal replicase." Cell. 94. 61-71 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Mizushima T.,Takaki,T.,Katayama,Tand Sekimizu,K.: "Site-directed mutational analysis for the ATP binding of DnaA protein." J.Biol.Chem. 273. 20847-20851 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kurokawa,K.,Mizushima,T.,Katayama,T.,and Sekimizu,K.: "A stimulation factor for hydrolysis of ATP bound to DnaA protein,the initiator of chromosomal DNA replication in Escherichia coli" Biochem.Biophys.Res.Commun.243. 90-95 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Hase,M.,Ishikawa,Y.,Sekimizu,K.,and T.Mizushima.: "Effect of glycerol on the affinity of DnaA protein for ATP in the presence of cardiolipin." J.Biochem. 123. 680-683 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ohba,A.,Inoue,R.,Akimitsu,N.,andSekimizu,K.: "Identification of proteins whoseamounts are altered by mutation in the pgsA gene of Escherichia coli." Biol.Pharm Bull.21. 1139-1141 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kurokawa,K.,Mizushima,Katayama,T.,and Sekimizu,K.: "A stimulation factor for hydrolysis of ATP bound to DnaA prtotein,the initiator of chromosomal DNA replication in Escheirihia coli." Biochem.Biophys.Res.Commun.(in press). (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mizushima,T.,Nishida,S.,Miki,T.,and Sekimizu,K.: "Negative Control of DNA Replication by Hydrolysis of ATP Bound to DnaA Protein,the Initiator of Chromosomal DNA Replication in Escherichia coli." EMBO J.6. 3724-3730. (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Mizushima,T.,Yokoyama,Tsuchiya,T.,and Sekimizu,K.: "Inhibition of thymidine transport in dnaA mutants of Escherichia coli." J.Biol.Chem.272. 21195-21200. (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Katayama,T.,Akimitsu,Miki,T.,and Sekimizu K.: "Overinitiation of chromosome replication in the Eschericha coli dnaAcos mutant depends on activation of oriC functin by the dam gene product." Molecular Microbiology. 25. 661-670. (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Kubota,T.,Katayama,T.,Mizushima,T.,and Sekimizu,K.: "Confomational transition of DnaA protein by ATP:,structual analysis of DnaA protein, the intiator of Escherichia coli chromosome replication." Biochem.Biophys.Res.Commun.232. 130-135. (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Ohba,A.,Mizushima,T.,Katayama,Tand Sekimizu,K.: "Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli." FEBS Lett.404. 125-128. (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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