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Molecular phylogeny of Rosaceae based on S-allele genotype and organelle DNA polymorphism

Research Project

Project/Area Number 09660021
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 園芸・造園学
Research InstitutionGifu University

Principal Investigator

MATSUMOTO Shogo  Faculty of Education Gifu University Associate Prof., 教育学部, 助教授 (90241489)

Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥2,900,000 (Direct Cost: ¥2,900,000)
Fiscal Year 1998: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 1997: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsRose / Apple / Molecular taxonomy / Self-incompatibility / matK / ITS / S-allele / PCR / オルガネラ
Research Abstract

(1) Phylogenetic analysis among 32 Rosa species was carried out using the matK sequence data of organelle DNA.The molecular classification conformed closely to the traditional classification with some anomalies such as polyphyly of section Pimpinellifoliae. As six original species that contributed to modern roses were found to belong to only one clade, the genetic background of modem roses seems to be a narrow one.
(2) Phylogenetic analysis among 23 Rosa species was carried out using the ITS sequence data of nuclear DNA.The molecular classification was well in agreement with that of matK sequence analysis. Subgenus Platyrhodon and Hulthemia formed a clade within four subgenera.
(3) S-allele genotypes of 46 Malus x domestica cultivars and Malus species were identified by S-allele specific PCR analysis. This analysis was useful in determining the genetic relationship within the genus Malus.
(4) 'Tsugaru', 'Akagi', and 'Youkou' seem to have been produced by using pollen parents possessing the S_7-, S_7- or S_9-allele, respectively. It was suggested that there were at least three uncloned S-alleles. The S-genotypes of 'Kinsei' and 'Kizashi' were inconsistent with expected S-genotypes of their parents, indicating that they are derivatives from pollen parents having the S_9- or S_3-allele. A new S-allele, S_g, was proposed to be present in 'American Summer Pearmain', 'Indo', 'Kitanosachi', 'Shizuka', Mutsu' and 'Meku 10'.
(5) A new S-RNase, S_g, shows a high similarity to SS_f (94%) at the deduced amino acid level. There are only two amino-acid differences between HV regions, which are responsible for the S-allele specificity of SS_g and SS_f.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] S.Matsumoto: "Molecular classification of wild roses using organelle DNA probes." Scientia Horticulturae. 68. 191-196 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "Chloroplast DNA probes as an aid in the molecular classification of Malus species." Scientia Horticulturae. 70. 81-86 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "Phylogenetic analyses of the genus Rosa using the matK sequence : molecular evidence for the narrow genetic background of modern roses." Scientia Horticulturae. 77. 73-82 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "S-genotypes of 15 apple cultivars and self-compatibility of ‘Megumi'" J.Japan Soc. Hort. Sci.(印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "A new S-allele in apple, ‘Sg', and its similarity to the ‘Sf' allele in ‘Fuji'" HortScience. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "Phylogenetic analyses of the subgenus Eurosa using the ITS nrDNA sequence." Acta Horticulturae. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, H.Wakita and H.Fukui: "Molecular classification of wild roses using organelle DNA probes." Scientia Horticulturae. 68. 191-196 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, H.Wakita and J.Soejima: "Chloroplast DNA probes as an aid in the molecular classification of Malus species." Scientia Horticulturae. 70. 81-86 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, M.Kouchi, J.Yabuki, M.Kusunoki, Y.Ueda and H.Fukui: "Phylogenetic analyses of the genus Rosa using the matK sequence : molecular evidence for the narrow genetic background of modern roses." Scientia Horticulturae. 77. 73-82 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, S.Komori, K.Kitahara, S.Imazu and J.Soejima: "S-genotypes of 15 apple cultivars and self-compatibility of 'Megumi'." J.Japan Soc.Hort.Sci.(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, K.Kitahara, S.Komori and J.Soejima: "S-allele in apple, 'Sg', and its similarity to the 'Sf' allele in 'Fuji'." A new HortScience.(in press.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto, M.Kouchi, Y.Ueda and H.Fukui: "analyses of the subgenus Eurosa using the ITS mDNA sequence." Phylogenetic Acta Horticulturae.(in press.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] S.Matsumoto: "Molecular classification of wild roses using organelle DNA probes." Scientia Horticulturae. 68. 191-196 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "Chloroplast DNA probes as an aid in the molecular classification of Malus species." Scientia Horticulturae. 70. 81-86 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "Phylogenetic analyses of the genus Rosa using the matK sequence : molecular evidence for the narrow genetic background of modern roses." Scientia Horticulturae. 77. 73-82 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "S-genotypes of 15 apple cultivars and self-compatibility of ‘Megumi'." J.Japan Soc.Hort.Sci.(印刷中).

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "A new S-allele in apple, ‘Sg',and its similarity to the ‘Sf' allele in ‘Fuji'." HortScience. (印刷中).

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "Phylogenetic analyses of the subgenus Eurosa using the ITS nrDNA sepuence." Acta Horticulturae. (印刷中).

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Matsumoto: "Molecular classification of wild roses using organelle DNA probes" Scientia Horticulturae. 68. 191-196 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.Matsumoto: "Chloroplast DNA probes as an aid in the molecular classification of Malus species." Scientia Horticulturae. 70. 81-86 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.Matsumoto: "Nucleotide sequence of grapevine (Vitis vinifera)cDNA similar to SNAP protein." DNA sequence. 8. 109-112 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 周 林: "In vitroにおけるバラの根頭がん腫病抵抗性の品種間差異" 園芸学会雑誌. (印刷中).

    • Related Report
      1997 Annual Research Report
  • [Publications] 脇田比呂美: "葉緑体DNAのRFLP分析によるバラ、リンゴ野生種の分類・系統" 園芸学会雑誌. 66. 24-25 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 北原健太郎: "リンゴ15栽培種のS遺伝子型と自家和合品種‘恵'の部分S遺伝子構造" 園芸学会雑誌. 66. 22-23 (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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