• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural Biology of multi-heme protein from ammonia oxidizing bacterium

Research Project

Project/Area Number 09660076
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionKanazawa University

Principal Investigator

FUKUMORI Yoshihiro  Kanazawa University, Faculty of Science, Professor, 理学部, 教授 (60135655)

Co-Investigator(Kenkyū-buntansha) TANAKA Nobuo  Tokyo Institue of Technology, Faculty of Bioscience and Biontechnology Professor, 生命理工学部, 教授 (50032024)
Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1998: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1997: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordsrespiratory proteins / cytochrome / heme / ammonia / hydroxylamine / Nitrosomonas / nitrification / respiratory chain
Research Abstract

(1)Crystalographic studies on cytochrome c-554 and cytochrome c-552.
We investigated the conditions for cyrstallization of cytochrome c-554 and c-552. Although the amorphous precipitates were obtained from cytochrome c-552 preparation, no crystals could not be prepared from cytochrome c-554.
(2)Mechanism of intra- and inter-electron transfers in the multi-heme protein.
It is generally accepted that the "NOH" is produced as an intermediate in the oxidation of hydroxylamine to nitrite by the hydroxylamine oxidoreductase. This strongly suggest that the two steps of two-electron transfer in the molecule is precisely occurred. However, the hydroxylamine oxidoreductase has only hemes c as prosthetic groups in the molecule which is one electron transfer component. In 1998, we tried to elucidate the molecular mechanism of electron transfer in the hydroxylamine oxidoreductase on the basis of the crystal structure. We found that the enzyme is a trimer and each monomer has 8 hemes c in the molecule, indicating that the enzyme has totally 24 hemes c in the molecule. The hemes are aligned to form a ring as heme-cluster in the molecule. One is triple heme-cluster which is composed to be a substrate-binding heme c, P460, and two hemes c. Another is double heme-cluster. The monomer has one triple-heme cluster, two double heme-clusters and one heme c in the molecule, suggesting that the electron transfer is triple-heme cluster * double heme-cluster * double heme-cluster. The characteristic heme arrangement has been elucidated in the present study.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (20 results)

All Other

All Publications (20 results)

  • [Publications] 五十嵐教之 他: "ヒドロキシルアミン酸化還元酵素の構造と機能" 生化学. 70(6). 441-446 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Higashibata 他: "Studies on the respiratory system in alkalophilic Bacillus,a proposed new respiratory mechanism" Extremophiles. 2. 83-92 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Y.Nakajima 他: "Purification and Characterization of a [3Fe-4S][4Fe-4S] type ferredoxin from hyperthermophilic archaeon,Pyrobaculum islandicum" J.Biochem.123. 521-527 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Noguchi 他: "Iron reductase for magnetite synthesis in magnetotactic bacterium,Magnetospirillum magnetotacticum" J.Bact.印刷中. (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Fujiwara 他: "Oxygen Homeostasis and Its Dynamics" Springer-Verlag Tokyo,

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] N.Igarashi et al.: "Structure and Function of Hydroxylamine oxidoreductase." Seikagaku. 70. 441-446 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] A.Higashibata et al.: "Studies on the respiratory system in alkalophilic Bacillus, a proposed new respiratory mechanism." Extremophiles. 2. 83-92 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Y.Nakajima et al.: "Purification and characterization of a [3Fe-4S][4Fe-4S]type ferredoxin from hyperthermophilic archaeon, Pyrobaculum islandicum." J.Biochem.123. 521-527 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Noguchi et al.: "Iron reductase for magnetite synthesis in magnetotactic bacterium, Magnetospirillum magnetotacticum." J.Bact.181. 2142-2147 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] T.Fujiwara et al.: "Structure and function of NO reductase with oxygen-reducing activity." Springer-Verlag Tokyo Oxygen Homeostasis and Its Dynamics. 591-596 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 五十嵐教之 他: "ヒドロキシルアミン酸化還元酵素の構造と機能" 生化学. 70(6). 441-446 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Higashibata 他: "Studies on the respiratory system in alkaliphilic Bacillus a proposed new respiratory mechanism" Extremophiles. 2. 83-92 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Nakajima 他: "Purification and characterization of a [3Fe-4S][4Fe-4S]Type Ferredoxin from Hyperthermophilic archaeon,Pyrobaculum islandicum" J.Biochem.123. 521-527 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Noguchi 他: "Iron reductase for magnetite synthesis in magnetotactic bacterium Magnetospirillum magnetotacticum" J.Bact. 印刷中. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Fujiwara 他: "Oxygen Homeostasis and Its Dynamics" Springer-Verlag Tokyo, 620(591-596) (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Fukumori et al.: "Enzymatic Iron Oxidation and Reduction in Magnetite-Synthesizing Magnetospirillum magnetotacticum." J.de Physique IV. 7. 659-662 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] N.Igarashi et al.: "The 2.8 angstrom structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium,Nitrosomonas europaea." Nature Structural Biology. 4. 276-284 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Y.Nagata et al.: "Occurrence of peptidyl D-amino acids in soluble fractions of several eubacteria,archaea and eukaryotes." Biochim.Biophys.Acta. 1379. 76-82 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 堅田利明 他: "新化学教科書シリーズ第10巻バイオケミストリー" 昭晃堂, 221 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] 安形高志 他: "細胞機能と代謝マップ" 東京化学同人, 302 (1997)

    • Related Report
      1997 Annual Research Report

URL: 

Published: 1997-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi