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Studies of population genetics on four mangrove tree species in Okinawa, Japan

Research Project

Project/Area Number 09660169
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 林学
Research InstitutionUniversity of the Ryukyus

Principal Investigator

BABA Shigeyuki  University of the Ryukyus Faculty of Agriculture, Depart.of Environmental Science and Technol.Associate Professor, 農学部, 助教授 (30117585)

Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 1998: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1997: ¥2,500,000 (Direct Cost: ¥2,500,000)
Keywordsmangroves / isozymes / polyacrilamid electrophoresis / genetic distance / phenotypes / genotyples / DNA analysis / micro-satellites / ザイモグラム / DNA解析 / ゲノムDNA
Research Abstract

In this studies, attempts have been made to analyze genetical variation of four mangrove tree species, Bruguiera gymnorrhiza (Rhizophoraceae). Kandelia candel (Rhizophoraceae), Rhizophora stylosa (Rhizophoraceae) and Sonneratia alba (Sonneratiaceac), distributed in Okinawa, Japan, and adding one species, Lumnitzera racemosa (Combretaceae) for DNA analysis. Leaves as samples were collected from trees of four species, and stocked in a deep-freezer before experiment. Polyacrylamide gel electrophoresis (PAGE) of a vertical slab-format method was used for analyzing isozyme loci of four mangroves. After the electrophoresis, 23 enzyme species were stained. Fine zymogrames were obtained five enzyme species for Rhizophora stylosa and five enzyme species for Bruguiera gymnorrhiza. Polymorphism was found only peroxidase (POD) for Bruguiera gymnorrhiza, but diaphorase (DIA), esterase (EST) and glucokinase GR) for Sonneratia alba.
DNA was extracted from leaves of Rhizophora stylosa. Both CTAB (Cetyl Trimethyl Ammmonia Bromide) and Ice Cold Buffer methods were applied for DNA extraction. The Ice Cold Buffer method was better than the CTAB method for DNA extraction. To obtain mitochondrial DNA fragments, 18 restriction enzyme species were applied. For amplification of chloroplast DNA, 23 primers were used. Mitokondorial and genom DNA fragments were amplified and analyzed. Since genetical variations were small in studied mangrove species collected in Okinawa, primers applied were not so efficiently worked. However, we could obtain evidence that micro-satellites are one of efficient ways for gentical variation analysis of Rhizophora stylosa in Ryukyu islands.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (8 results)

All Other

All Publications (8 results)

  • [Publications] 馬場繁幸: "沖縄産マングローブ樹種のアロザイムの解析(仮題)" 琉球大学農学部学術報告. (投稿予定). (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 馬場繁幸: "沖縄産マングローブ樹種のアイソザイムによる遺伝解析(仮題)" Mangrove Science. (投稿予定). (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Shigeyuki BABA: "Studies on allozymes of mangrove tree species distributed in Okinawa." Sci.Bull.Agric.Univ.Ryukyus. (will be submitted).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Shigeyuki, BABA: "Genetical variation of mangroves in Okinawa" Mangrove Science. (will be submitted).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] 馬場繁幸: "沖縄産マングローブ樹種のアロザイムの解析(仮題)" 琉球大学農学部学術報告. (発表予定). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] 馬場繁幸: "沖縄産マングローブ樹種のアイソザイムによる遺伝解析(仮題)" Mangrove Science. (発表予定). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] 馬場繁幸: "マイクロサテライトを用いたマングローブの家系分析(仮題)" 日本植物学会誌. (投稿予定).

    • Related Report
      1997 Annual Research Report
  • [Publications] 馬場繁幸: "沖縄産マングローブのアロザイムの解析(仮題)" 琉球大学農学部学術報告. (投稿予定).

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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